Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0928
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1340 + 36424426-36424542,36425212-36425283,36425383-364254... 63 2e-10
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300... 48 5e-06
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 31 1.00
09_01_0019 + 403078-404211 30 1.7
05_01_0120 - 828834-831143 29 3.0
04_01_0250 + 3291368-3291454,3291621-3291938 29 4.0
01_06_1229 + 35551522-35552169 29 4.0
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 28 5.3
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 27 9.3
>01_06_1340 +
36424426-36424542,36425212-36425283,36425383-36425486,
36425567-36425669,36425757-36425918,36426043-36426320,
36429428-36429578,36429795-36429959,36430077-36430154,
36430284-36430373,36430460-36430546,36430636-36430722,
36430779-36430890,36431033-36431136,36431435-36431510,
36431954-36432104,36432246-36432314,36432408-36432474,
36433060-36433089
Length = 700
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +1
Query: 244 QKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQE 423
++I +K+G+AV+T +G LA+GRL ++ EQV + + EG E I+VTSGAV GRQ+L
Sbjct: 34 KRIIIKVGTAVVTGPNGR-LAMGRLGALCEQVKQLNFEGYEVILVTSGAVGVGRQRLKYR 92
Query: 424 LLMSLSMRETLSP 462
L++ S + +P
Sbjct: 93 KLVNSSFADLQNP 105
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +3
Query: 504 EGAAAVGQSELMSMYDAMFSQYNVKIAQVLVTKPDF 611
+ AAVGQS LM++YD +FSQ +V +Q+LVT DF
Sbjct: 112 KACAAVGQSVLMAIYDTLFSQLDVTSSQLLVTDRDF 147
>05_05_0078 -
22229607-22229685,22229851-22229921,22229992-22230058,
22230195-22230263,22230376-22230526,22230915-22230990,
22231466-22231569,22231676-22231772,22231845-22231931,
22232016-22232102,22232190-22232279,22232405-22232482,
22232595-22232759,22232898-22233048,22233610-22233887,
22234072-22234233,22234324-22234560,22234633-22234704,
22235187-22235273,22235498-22235557
Length = 755
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Frame = +1
Query: 262 LGSAVITREDGNGLALGRLASIIEQVA----------ECHHEGRECIMVTSGAVAFGRQK 411
+G+AV++R+DG LALGR+ ++ EQV E + G E I+VTSGAV GRQ+
Sbjct: 50 VGTAVVSRQDGR-LALGRVGALCEQVPNQRKVAMQVKELNSLGYEVILVTSGAVGVGRQR 108
Query: 412 LTQELLMSLSMRETLSP 462
L L++ S + P
Sbjct: 109 LRYRKLVNSSFADLQKP 125
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +3
Query: 504 EGAAAVGQSELMSMYDAMFSQYNVKIAQVLVTKPDFYNEETR 629
+ AAVGQS LM++YD +F+Q +V +Q+LVT DF N + R
Sbjct: 132 KACAAVGQSGLMALYDMLFNQLDVSSSQLLVTDSDFENPKFR 173
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 30.7 bits (66), Expect = 1.00
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -3
Query: 523 PTAAAPSDPKCCLRPL*CDRLVTKSPAWIKT*AAPASVSAARTLRRRSSPLCIRV 359
P A + +P CC L V PA APA+ +A+ LR R+ LC V
Sbjct: 62 PFACSGGEPSCCAHGLLRRACVRAHPAVAA--CAPAAAAASHPLRCRALELCFNV 114
>09_01_0019 + 403078-404211
Length = 377
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 127 TADDRKICARRRLERRQESIG*R*KEAENLH*QIAAKVRQKIG 255
+ADDRK +RRR R+ ES G + + H Q A + ++K G
Sbjct: 334 SADDRKRSSRRRRHRKSESSG---SDGDERHGQGAKRSKEKRG 373
>05_01_0120 - 828834-831143
Length = 769
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 116 GSDKLPTTGRYAPGEGLSVDKRALASAERK-QRTFTDRSQLKYA 244
G+ K G PGEGL +D +L S RK Q F D+ K A
Sbjct: 106 GASKAEGAGSAKPGEGLRLDLSSLRSQGRKDQIAFFDKECSKVA 149
>04_01_0250 + 3291368-3291454,3291621-3291938
Length = 134
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 438 IHAGDFVTKRSH*RGRRQHFGSEGAAAVGQSELMSMYDA 554
+H G+ + ++ +R+H G +G AV Q +++ DA
Sbjct: 43 VHRGNVIEEQEQLNEQRRHGGEDGDGAVAQETWLTLTDA 81
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 113 IGSDKLPTTGRYAPGEGLSVDKRALASAERKQRTFTDR 226
+G ++ GR PG LS D +++A+ ER+ R +DR
Sbjct: 23 LGEGRMRGGGRRRPGAKLSTDPQSVAARERRHR-ISDR 59
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 5 RVVYTRRKKKCCMYLNSVKTMLRFSRNA 88
R+ +T +K CC + V LRF NA
Sbjct: 650 RITHTTAQKPCCCSITDVTVGLRFKENA 677
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 277 SQHYLTSHQSSGVL*LRSVSEGSLLPFSASQCSLVYAQAFAGRISSGRRQFIRSNNAV 104
+Q Y T +G +++ +L PF A + + FA +S G +F+RS A+
Sbjct: 161 AQKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGAL 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,569
Number of Sequences: 37544
Number of extensions: 322697
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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