Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0928
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)                   101   6e-22
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    28   7.2  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2)                     27   9.5  

>SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)
          Length = 835

 Score =  101 bits (241), Expect = 6e-22
 Identities = 51/87 (58%), Positives = 66/87 (75%)
 Frame = +1

Query: 235 KVRQKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKL 414
           K  +++ VKLGSAVITR D  G+ALGRL+SI+EQ+AE  + GRE ++VTSGAVAFG+QKL
Sbjct: 48  KKAKRVIVKLGSAVITRGDECGVALGRLSSIVEQLAELQNSGREMLLVTSGAVAFGKQKL 107

Query: 415 TQELLMSLSMRETLSPSDHTREDAGSI 495
             E L+S S+R+TL P D   +D G I
Sbjct: 108 RHENLLSQSVRQTLKPQDGLNKDNGVI 134



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +3

Query: 513 AAVGQSELMSMYDAMFSQYNVKIAQVLVTKPDFYNEETR 629
           AAVGQ  LMS+Y+AMF+QY +   Q+L+T+PD  +   R
Sbjct: 140 AAVGQGGLMSLYEAMFAQYGLTCGQILLTRPDLRDAYAR 178


>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = -3

Query: 307  ELVRFHLLS*SQHYLTSHQSSGVL*LRSVSEGSLLPFSASQCSLVYAQAFAGRISSGRRQ 128
            ++  FH ++ S H +TS QS     +RS     L  +  S+ S+   Q+     S   RQ
Sbjct: 787  QVTSFHQVT-SVHQVTSRQS-----IRSRQSIRLRQYIRSRQSIRSRQSIRSHQSIRSRQ 840

Query: 127  FIRSNNAVKTLSDSISRET 71
            +IRS  ++++     SR++
Sbjct: 841  YIRSRQSIRSRQSIRSRQS 859


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 443 MDKDMSSSCVSFCRPNATAPL 381
           MD   S SC  FCRP    PL
Sbjct: 261 MDNTQSMSCAEFCRPAIMKPL 281


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 280  TREDGNGLALGRLASIIEQVAECHHEGREC 369
            T  D   L  GR A+I+E+     HE R+C
Sbjct: 2182 TELDSQDLVSGRTANIVEKTERTIHEKRDC 2211


>SB_369| Best HMM Match : Pox_A32 (HMM E-Value=0.2)
          Length = 856

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = -3

Query: 265 LTSHQSSGVL*LRSVSEGSLLPFSASQCSLVYAQAFAGRISSGRR------QFIRSNNAV 104
           LT H   GVL  R++SEG LL  + +    V   + A ++S G +      + +R +N  
Sbjct: 168 LTDH---GVLYPRALSEGLLLEITLATVDQVVVGSDATKLSYGIKNLELEYESLRDDNLA 224

Query: 103 KTLSDSISRET*HCFDTIQIHTTLFFS 23
           ++ + +    T   ++ + +H T   S
Sbjct: 225 RSAAAAYQNGTTFFYEQVNLHKTFVIS 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,407
Number of Sequences: 59808
Number of extensions: 357192
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)