Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0928
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical pr...   105   2e-23
Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical pr...   105   2e-23
AL117204-10|CAB55125.1|  196|Caenorhabditis elegans Hypothetical...    28   4.8  
Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    28   6.3  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    28   6.3  

>Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical
           protein T22H6.2b protein.
          Length = 802

 Score =  105 bits (253), Expect = 2e-23
 Identities = 55/83 (66%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
 Frame = +1

Query: 235 KVRQKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKL 414
           K  Q++ VKLGSAVITRED  GLALGRLASI+EQV+E    GR+ ++V+SGAVAFGRQKL
Sbjct: 79  KKAQRVVVKLGSAVITREDECGLALGRLASIVEQVSELQQSGRQMLIVSSGAVAFGRQKL 138

Query: 415 TQELLMSLSMRETL-SPSDHTRE 480
            QEL+MS+SMR+TL  PS  T +
Sbjct: 139 RQELVMSMSMRQTLRGPSGMTAD 161



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +3

Query: 513 AAVGQSELMSMYDAMFSQYNVKIAQVLVTKPDFYNEETR 629
           AA G   LMS+Y+ +F QY + +AQVL+TKPD  +++ R
Sbjct: 166 AASGMPGLMSLYEQLFQQYGITVAQVLLTKPDIDDDQRR 204


>Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical
           protein T22H6.2a protein.
          Length = 800

 Score =  105 bits (253), Expect = 2e-23
 Identities = 55/83 (66%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
 Frame = +1

Query: 235 KVRQKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKL 414
           K  Q++ VKLGSAVITRED  GLALGRLASI+EQV+E    GR+ ++V+SGAVAFGRQKL
Sbjct: 77  KKAQRVVVKLGSAVITREDECGLALGRLASIVEQVSELQQSGRQMLIVSSGAVAFGRQKL 136

Query: 415 TQELLMSLSMRETL-SPSDHTRE 480
            QEL+MS+SMR+TL  PS  T +
Sbjct: 137 RQELVMSMSMRQTLRGPSGMTAD 159



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +3

Query: 513 AAVGQSELMSMYDAMFSQYNVKIAQVLVTKPDFYNEETR 629
           AA G   LMS+Y+ +F QY + +AQVL+TKPD  +++ R
Sbjct: 164 AASGMPGLMSLYEQLFQQYGITVAQVLLTKPDIDDDQRR 202


>AL117204-10|CAB55125.1|  196|Caenorhabditis elegans Hypothetical
           protein Y116A8C.19 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +2

Query: 14  YTRRKKKC-----CMYLNSVKTMLRFSRNAIRKRFYSVIGSDKLPTTGRYAPGEGLSVDK 178
           + RR +KC     C + +SV   LRF++     R Y  +  DK  TTG    G       
Sbjct: 91  FQRRGQKCIYGEQCKFAHSVHE-LRFTQAKKTHRNYKTVLCDKFSTTGYCKYGARCQFIH 149

Query: 179 RALAS 193
           RAL S
Sbjct: 150 RALGS 154


>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 99  RFLIAFLEKRSIVLTLFKYIQHFFF 25
           +FL++  E  +++LT  +++Q FFF
Sbjct: 67  QFLVSIYESSNVILTTSQFLQSFFF 91


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 99  RFLIAFLEKRSIVLTLFKYIQHFFF 25
           +FL++  E  +++LT  +++Q FFF
Sbjct: 67  QFLVSIYESSNVILTTSQFLQSFFF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,834
Number of Sequences: 27780
Number of extensions: 257735
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)