Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0928
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 482 TQAAFWIRGRCGGRSVGAHVDV*CHVL 562
           T    W+  R   R + A V++ CH+L
Sbjct: 270 TLTVLWLDSRSTERMIAASVNLICHIL 296


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 50  NSVKTMLRFSRNAIRKRFYSVIGSDKLPTTGRYAP 154
           N +KT L   ++ I ++ Y+V+ S   P TG  +P
Sbjct: 79  NPIKTALSVCKSLIERQVYAVVVSH--PLTGDLSP 111


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 229 RSVSEGSLLPFSASQCSLVYAQAFAGRISSGR 134
           R   E  L+P+  ++ + VYA   AGR S  R
Sbjct: 464 RQERESELVPYLENKGNGVYAWIGAGRDSDSR 495


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 316 LASIIEQVAECHHEG 360
           +  I+E V  CHH G
Sbjct: 15  IQQILESVHHCHHNG 29


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 513 AAVGQSELMSMYDAMFSQYNVKIAQVLVT 599
           A  G  +   +YD + S YN  +  V+ T
Sbjct: 22  AVAGNPDAKRLYDDLLSNYNKLVRPVVNT 50


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 513 AAVGQSELMSMYDAMFSQYNVKIAQVLVT 599
           A  G  +   +YD + S YN  +  V+ T
Sbjct: 22  AVAGNPDAKRLYDDLLSNYNKLVRPVVNT 50


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 534 APTDRPPQRPRIQNA 490
           A T  PP  PR+QNA
Sbjct: 636 ARTLEPPIMPRVQNA 650


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 423 LLRQFLPPERYGAA 382
           LLRQ +P   YGAA
Sbjct: 56  LLRQGVPGHHYGAA 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,511
Number of Sequences: 438
Number of extensions: 3101
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)