Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0927
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 103 2e-23
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 27 1.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 27 3.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.3
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 25 7.0
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 7.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 9.2
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 9.2
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 103 bits (247), Expect = 2e-23
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +2
Query: 38 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 217
ALLSV DKTGLL LAK+L+ G++L+ SGGTA +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3 ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62
Query: 218 TLHPAVHAGILA 253
TLHPAVH GILA
Sbjct: 63 TLHPAVHGGILA 74
Score = 76.6 bits (180), Expect = 3e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +1
Query: 265 SDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 420
SD++D+ Q E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 79 SDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +2
Query: 527 RQRLALXAFTHTSDYDLAISDYFRKQYFARASPTDLK 637
R AL AF T+ YD AI+DYFRKQY A L+
Sbjct: 164 RNTYALKAFASTASYDAAITDYFRKQYAAGVDQLTLR 200
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 426 KNHDRVTVVCXPADYDAVVKEIKENK 503
KNH RVT++ PADY + +K
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDK 158
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 407 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 312
V PP+S F +AS V G +W NGYR T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 13 EHGVKWKTSSSQRFGQNGS 69
+HG++W T Q FG+ S
Sbjct: 647 DHGIRWVTLGEQNFGEGSS 665
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 139 ASERRPDSSRCVGHHESTGDAR--GSGENFTSSGTRW 243
A +RP S R G + GD+R G G N S + W
Sbjct: 1273 AESQRPSSGRMHGRDMNRGDSRMGGRGSNPPFSSSDW 1309
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 500 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 384
+L +F DY +G D VV++ +TP M F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 464 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 321
G+ T G V + RRV P +S+ ++ TV +DT ++ +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 184 ESTGDARGSGENFTSSGTRWYLSSLSDSDQEDMKR 288
+ TG A SGENFT++ L +D E ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 575 GHSPKYE*TXSGLISALCLKTSVMFVLFDFFDY 477
G +P+Y +I +LC+ ++ FVL ++ Y
Sbjct: 451 GQTPEYIEGIQAMIVSLCIIIAIAFVLTGYYIY 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,737
Number of Sequences: 5004
Number of extensions: 44006
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -