Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0927
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 85 3e-17
03_01_0350 - 2753217-2754152 30 1.3
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 29 3.1
11_02_0149 - 8801675-8804332 29 4.1
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 5.4
08_01_0621 - 5426210-5427787 28 7.2
06_03_0411 - 20520823-20521674 28 7.2
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 7.2
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 7.2
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 27 9.5
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 85.4 bits (202), Expect = 3e-17
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = +2
Query: 32 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 211
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 212 VKTLHPAVHAGILA 253
VKTLHP+VH GILA
Sbjct: 106 VKTLHPSVHGGILA 119
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 310 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 420
VVV NLYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 500 QTSQTSLGTRQRLALXAFTHTSDYDLAISDYFRKQ 604
Q Q R+ LA AF H + YD A+S++ KQ
Sbjct: 201 QGKQDDQQFRKMLAWKAFQHVASYDSAVSEWLWKQ 235
>03_01_0350 - 2753217-2754152
Length = 311
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -1
Query: 281 MSSWSESDNELRYQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAG 102
+ +W + + + R + + F+P A+PV TH + +E+ R+ H
Sbjct: 156 IDTWLQGNARCPFCRSDVTLPFTPPAAAAPVRPTSATHPD-DDEDAESARRHHHHHHNHN 214
Query: 101 HIPTDSLLTRV 69
H P D L+ +
Sbjct: 215 HRPDDELINSI 225
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 88 SVGMWPAVDRQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTRW 243
SV PA+ RH R SSR GH + GD SG +G W
Sbjct: 721 SVHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRKGAPAGKGW 771
>11_02_0149 - 8801675-8804332
Length = 885
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 11 QNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 112
QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 555 QNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 390 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 310
DVL +R GHV L Y L E DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 479 YSIVVGRVTDDGDPVVVLGXARRRVTPP 396
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>06_03_0411 - 20520823-20521674
Length = 283
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 139 ASERRPDSSRCVGHHESTGDARGSGENFTSSGTRWYLSSLSDSDQEDMKR 288
++E SSR +G + G+ +F+S+ R YLS D ++E+M+R
Sbjct: 205 SAEEEAASSRRIGSAPA-----GTSSSFSSAPRRPYLSEAWDDEEEEMRR 249
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 138 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 31
AV PP+A CRPH RL + V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/82 (24%), Positives = 27/82 (32%)
Frame = +1
Query: 28 WKTSSSQRFGQNGSTLVSKESVGMWPAVDRQWRYRHGASERRPDSSRCVGHHESTGDARG 207
W+ S S G + S G P RQW Y + P S + +S
Sbjct: 1089 WRNSRSPELG--AGAVYGSSSQGYVPEPSRQWNYGQQSYNPEPYSRQWSSGQQSYNTVTA 1146
Query: 208 SGENFTSSGTRWYLSSLSDSDQ 273
SSG + Y + S Q
Sbjct: 1147 EPSRQWSSGQQSYSNPAEPSRQ 1168
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 64 GSTLVSKESVGMW--PAVDRQWRYRHGASERRPDSSRC 171
G+ L SK+ VG++ PAVD +R+ +++ + ++C
Sbjct: 279 GTVLGSKDIVGIYRTPAVDNHKEFRYNLFKKQAEHTKC 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,546
Number of Sequences: 37544
Number of extensions: 335834
Number of successful extensions: 1222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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