Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0927
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 79 4e-15
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.064
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20) 33 0.20
SB_36310| Best HMM Match : DEAD (HMM E-Value=1.4) 31 0.79
SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 30 1.8
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44) 29 2.4
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29) 29 3.2
SB_26612| Best HMM Match : NC (HMM E-Value=6.7) 29 4.2
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 29 4.2
SB_44615| Best HMM Match : Ribosomal_L25p (HMM E-Value=3.5) 29 4.2
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_25687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7) 28 5.6
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 28 5.6
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 28 7.4
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6) 28 7.4
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 27 9.7
SB_52159| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 9.7
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 27 9.7
SB_20152| Best HMM Match : CRAL_TRIO_N (HMM E-Value=2.6) 27 9.7
SB_38317| Best HMM Match : bZIP_2 (HMM E-Value=5.1e-14) 27 9.7
SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083) 27 9.7
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 113 bits (272), Expect = 1e-25
Identities = 57/84 (67%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDI 181
K+ MA+ G LALLSVS+K GL+ AK L + G +L+ASGGTA A+RNAG+ V+DVS+I
Sbjct: 24 KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEI 83
Query: 182 TRAPEMLGGRVKTLHPAVHAGILA 253
T APEMLGGRVKTLHPAVH GILA
Sbjct: 84 TGAPEMLGGRVKTLHPAVHGGILA 107
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1
Query: 247 LSSLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 420
L+ +S+ D+ DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 106 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +2
Query: 500 QTSQTSLGTRQRLALXAFTHTSDYDLAISDYFRKQYFARASPTDLK 637
+T T TR+ LAL AF+HT+ YD+AISDYFRK+Y S L+
Sbjct: 191 ETCDTLPDTRKTLALKAFSHTASYDMAISDYFRKEYSENVSHIPLR 236
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 426 KNHDRVTVVCXPADYDAVVKEIKENK 503
KNH+RVTVVC P DY+ V+ E+ EN+
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENE 191
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1
Query: 247 LSSLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 420
L+ +S+ D+ DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 3 LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 426 KNHDRVTVVCXPADYD 473
KNH+RVTVVC P DY+
Sbjct: 63 KNHERVTVVCDPEDYN 78
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 476 CSQRNQREQTSQTSLGTRQRLALXAFTHTSDYDLAISDYFRK 601
C++RN R Q Q LG R + L + DYD ++ YF K
Sbjct: 3714 CARRNNRNQWIQVDLGRRHIVTLISTQGRQDYDQWVTSYFVK 3755
>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
Length = 918
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDPR+ V++ + + G+R E + ++ T +P D++L
Sbjct: 839 YPRLPATIRFDPDPRSRIVIAKQGRPVPVPGKRGE---KVDAYKGTVVEVPLDAVL 891
>SB_36310| Best HMM Match : DEAD (HMM E-Value=1.4)
Length = 1042
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLLTRVD 66
Y R+P ++F PDP + + + G+R E Y + T +P D++L R+
Sbjct: 944 YPRLPATIRFDPDPSVAHRYRKKGRPVPVPGKRGEKVGAY---KGTVVEVPLDAVLNRLP 1000
Query: 65 PFCPK 51
P+
Sbjct: 1001 RHFPR 1005
>SB_23457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E R ++ST +P D++L
Sbjct: 305 YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGE---RVDEYKSTVVEVPLDAVL 357
>SB_51115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 29.9 bits (64), Expect = 1.8
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Frame = -1
Query: 512 SVMFV-LFDFFDYSIVVGRVTDDGDPVVVLGXARRRVT----PPMSMFSTASATVTSGLD 348
S+MF L F +Y++ T G V+ R PP +F+ A+ T S +
Sbjct: 509 SLMFEELSKFTEYTLAACGYTSKGCGVISHVTVRTHEDVPSLPPQQLFA-ANLTSQSTIT 567
Query: 347 TVWTNGYRLQTTTLIISYF*RFMSSWSESDNELRYQRVPLDVKFSPDPRASPVLS*CPTH 168
W+ R ++ Y R+ S S +D +R + L+++ P+ T
Sbjct: 568 LTWSPVPRGHVNGVLRGYILRY-SMTSSADIRVRKPKT-LEMRIPPEK----------TR 615
Query: 167 LELSGRRSEAPWRYRHWRSTA-GHIPTDSLLTRVDPFCPK 51
+ELSG +S + W+++ T+ G P ++ CPK
Sbjct: 616 IELSGLQSYSLWKFQLLAYTSVGEGPETEVIVAETCRCPK 655
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = +1
Query: 181 HESTGDARGSGENFTSSGTRWYLSSLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPD 360
+E D+ ++ S R SS+S+SD+ + + + P+ +
Sbjct: 340 NEILSDSESLSDSAEYSADRIQPSSISESDEGHLSKVSDDSTEEYSTRFAPYEEEPLARP 399
Query: 361 VTVADAVENIDIGGVT 408
T+ D EN+D+ G+T
Sbjct: 400 GTIEDEEENVDLDGLT 415
>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 885
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -1
Query: 248 RYQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLLTRV 69
+Y R+P ++F PDP + + + G+R E + ++ T +P D++L +
Sbjct: 703 KYPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGE---KVDAYKGTVVEVPLDAVLNGL 759
Query: 68 DP 63
P
Sbjct: 760 PP 761
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 115 RQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTR 240
R+WR R +RR R E +GD GSGE TR
Sbjct: 190 RKWRQRRKWRQRRKWRQRRKWRREGSGDREGSGEEKEVGMTR 231
>SB_7068| Best HMM Match : ResIII (HMM E-Value=0.29)
Length = 1131
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDPR + + + G+R E + ++ T +P D++L
Sbjct: 1023 YPRLPATIRFDPDPRVAHRYRKQGRPVPVPGKRGE---KVDAYKGTVVEVPLDAVL 1075
>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
Length = 451
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 500 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 330
V+ + S+ RVT D V R+TP M TAS T +T +DTV+T
Sbjct: 68 VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127
Query: 329 YRLQTTTLII 300
TL++
Sbjct: 128 VTFYRLTLVM 137
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 500 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 330
V+ + S+ R+T D V R+TP M TAS T +T +DTV+T
Sbjct: 136 VMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 195
Query: 329 YRLQTTTLII 300
TL++
Sbjct: 196 VTFYRLTLVM 205
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 500 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 330
V+ + S+ R+T D V R+TP M TAS T VT +DTV+T
Sbjct: 272 VMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVYTAS 331
Query: 329 YRLQTTTLIIS 297
TL+++
Sbjct: 332 VTFFRVTLVMN 342
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHW 117
Y R+P ++F PDP + + + G+R E W+Y W
Sbjct: 957 YPRLPATIRFDPDPSFAHRYRKQGRPVPVPGKRGE-KWKYAGW 998
>SB_44615| Best HMM Match : Ribosomal_L25p (HMM E-Value=3.5)
Length = 582
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -1
Query: 269 SESDNELRYQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPT 90
SES Y R+P ++F PDP + + G+R E Y + T +P
Sbjct: 438 SESTTGKNYPRLPATIRFDPDPSVAHRYRKKGRPAPVPGKRGENVDAY---KGTVVEVPI 494
Query: 89 DSLL 78
D++L
Sbjct: 495 DAVL 498
>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 262 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVT 408
+SD+ED + + YE+I ++ + D+ ++ I IGG T
Sbjct: 5 ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53
>SB_25687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + + G+R E + ++ T +P D++L
Sbjct: 651 YPRLPATIRFDPDPSVAHLYRKQGRPVPVPGKRGE---KVDAYKGTVVEVPLDAVL 703
>SB_58983| Best HMM Match : Integrin_alpha (HMM E-Value=2.7)
Length = 237
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/90 (21%), Positives = 36/90 (40%)
Frame = -1
Query: 497 LFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRLQ 318
L F V RVT + +P+V + P+ +++ LD W ++
Sbjct: 35 LMSFNPTKCFVMRVTRNREPIVFNYTLMNHILKPVEHHPYLGVELSNTLDWSWHINNKVS 94
Query: 317 TTTLIISYF*RFMSSWSESDNELRYQRVPL 228
+ +F R +S+ E+ E Y+ + L
Sbjct: 95 KANQTLGFFRRNLSNCPETFKEAAYKTLVL 124
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 494 FDFFDYSIVVGRVTDDGDPVVVL 426
FDF D+SI+V ++T PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E + ++ TA P D++L
Sbjct: 675 YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGE---KVDAYKGTAAEFPLDAVL 727
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E + ++ TA P D++L
Sbjct: 613 YPRLPATIRFDPDPSVAHRYRKQGRPVPVPGKRGE---KVDAYKGTAAEFPLDAVL 665
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E Y + T +P D++L
Sbjct: 604 YPRLPATIRFDPDPSVAHCYRKQGRPVPVPGKRGEKVVAY---KGTVVEVPLDAVL 656
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 340 QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 471
+T P+ T +I GV+ A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613
>SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E ++ ++ T +P D++L
Sbjct: 676 YPRLPATIRFDPDPGVAHHYRKQGRPVPVPGKRGE---KFDAYKGTVVEVPLDAVL 728
>SB_45980| Best HMM Match : C1_3 (HMM E-Value=4.6)
Length = 771
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E + +R T +P D++L
Sbjct: 103 YTRLPATIRFDPDPSVAHRYRKQGRSVPVPGKRGE---KVDAYRGTVVDVPLDAVL 155
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 367 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTR 462
+A AV N+ + T LR P T TTGSPS VTR
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTR 278
>SB_52159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP + + + G+R E Y + T ++P D++L
Sbjct: 17 YPRLPATIRFDPDPSVAHRYRKQWRSVPVPGKRGEKADAY---KGTVVYVPLDAVL 69
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 316 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTM 474
+C+ +V P V + I VT PRTT P+S + P TM
Sbjct: 1446 ICSFVKYVAQFGAPPVQPLSGPQRASISRVT-----PRTTPDKPTSSSTPVTM 1493
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLL 78
Y R+P ++F PDP S + + G R E + ++ST +P D++L
Sbjct: 750 YPRLPATIRFDPDPSVSHRYRKQGRPVPVPGIRGE---KVDAYKSTVVEVPLDAVL 802
>SB_20152| Best HMM Match : CRAL_TRIO_N (HMM E-Value=2.6)
Length = 490
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 272 WSESDNELR-YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHI 96
W S++ + Y R+P ++F PDP + + + G+R E + ++ T +
Sbjct: 422 WRVSEHHRKNYPRLPATIRFDPDPSVAHRYRKQWRPVPVPGKRGE---KVDAYKGTVVEV 478
Query: 95 PTDSLL 78
P D++L
Sbjct: 479 PLDAVL 484
>SB_38317| Best HMM Match : bZIP_2 (HMM E-Value=5.1e-14)
Length = 561
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = +1
Query: 40 SSQRFGQNGSTLVSKESVGMWPAVDRQWRYRHGASERRPDSSRCVGHHESTGDARGSGEN 219
SS G + S WP + R +G S++ D S C H G + EN
Sbjct: 130 SSLSASWEGYRITSCNFQPQWPTGNLPPRQSNGHSDKPTDDSECEDHEAKRGKSNHETEN 189
>SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083)
Length = 1105
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 245 YQRVPLDVKFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGHIPTDSLLTRVD 66
Y R+P ++F PDP A+ + + G+R E + ++ T +P +L V
Sbjct: 934 YPRLPATIRFDPDPSAAHRYCKQGRPVPVPGKRGE---KVDAYKGTVVEVPLGVVLNGVP 990
Query: 65 P 63
P
Sbjct: 991 P 991
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,964
Number of Sequences: 59808
Number of extensions: 382342
Number of successful extensions: 1292
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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