Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0927
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical pr... 109 2e-24
AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical ... 33 0.17
U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical pr... 30 1.6
U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 29 2.8
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 29 2.8
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 6.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 6.5
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U58747-1|AAL27234.3| 594|Caenorhabditis elegans Hypothetical
protein C55F2.1b protein.
Length = 594
Score = 109 bits (262), Expect = 2e-24
Identities = 54/87 (62%), Positives = 63/87 (72%)
Frame = +2
Query: 17 MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPE 196
M LA++SVSDKTGL+ LA L GL LIASGGTA A+R+ G+ V DV+D+T+ PE
Sbjct: 1 MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60
Query: 197 MLGGRVKTLHPAVHAGILAHYQTLTRK 277
MLGGRVKTLHPAVH GILA RK
Sbjct: 61 MLGGRVKTLHPAVHGGILARDTESDRK 87
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = +1
Query: 259 SDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 420
++SD++D+++ +SVVVCNLYPF +TV D +V +AVENIDIGGVTLLRA
Sbjct: 82 TESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +3
Query: 426 KNHDRVTVVCXPADYDAVVKEIK 494
KNH+RV+V+C PADYD ++ E+K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 512 TSLGTRQRLALXAFTHTSDYDLAISDYFRKQY 607
T+ RQ LAL AF HT+ YD +IS + R+++
Sbjct: 164 TTRERRQLLALKAFEHTTSYDESISGFMRRRF 195
>AF025450-7|AAN63434.2| 170|Caenorhabditis elegans Hypothetical
protein C41H7.2 protein.
Length = 170
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 221 KFSPDPRASPVLS*CPTHLELSGRRSEAPWRYRHWRSTAGH 99
KF PR P S C T + SG +EAP +R ++TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168
>U47144-3|AAB52619.1| 292|Caenorhabditis elegans Hypothetical
protein ZC53.6 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -3
Query: 204 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 25
PS S A S +RP +++ A P A H+D+LF E LRR +FPF
Sbjct: 6 PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57
Query: 24 D 22
+
Sbjct: 58 E 58
>U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical
protein F45E4.6 protein.
Length = 322
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 298 EMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML 477
+ I + +LYPFV + T ADAV++ + + + RTTT + + T+ +
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTTTTAKTTTKASKSS 303
Query: 478 *SKKSKRTNIT 510
+ RT +T
Sbjct: 304 KTVPHSRTFLT 314
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 430 TTTGSPSSVTRPTTML*SKKSKRTNITDVFRHK 528
T + S ++ RP T SKKSK + +TD + K
Sbjct: 215 TNSASIGALVRPMTSQNSKKSKNSGVTDYMKRK 247
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 430 TTTGSPSSVTRPTTML*SKKSKRTNITDVFRHK 528
T + S ++ RP T SKKSK + +TD + K
Sbjct: 215 TNSASIGALVRPMTSQNSKKSKNSGVTDYMKRK 247
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 ASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSD 178
ASNG A + S T A + S+CG I S GT + N TV +D
Sbjct: 1497 ASNGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYLNGFTTVVQSTD 1549
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 115 RQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTR 240
+++R RHG E P R HH G+ + EN + ++
Sbjct: 212 KKYRPRHGEEEEEPSRER--EHHHHRGEEKPETENIAETPSK 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,194
Number of Sequences: 27780
Number of extensions: 260280
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -