Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0927
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    89   2e-18
At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger) fa...    32   0.37 
At1g64410.1 68414.m07301 hypothetical protein                          29   2.0  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    29   2.0  
At5g41180.1 68418.m05005 leucine-rich repeat protein kinase, put...    29   2.6  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    29   2.6  
At5g15110.1 68418.m01770 pectate lyase family protein similar to...    29   3.4  
At2g04220.1 68415.m00407 hypothetical protein                          28   6.0  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    27   7.9  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +2

Query: 11  QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITR 187
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 188 APEMLGGRVKTLHPAVHAGILA 253
            PEML GRVKTLHP +H GILA
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILA 145



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 310 VVVCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 420
           VVV NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203


>At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 493

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 23/67 (34%), Positives = 28/67 (41%)
 Frame = +1

Query: 79  SKESVGMWPAVDRQWRYRHGASERRPDSSRCVGHHESTGDARGSGENFTSSGTRWYLSSL 258
           S ESVG+     +Q  + H  S  R   S      +   D R S     S  TRW L S 
Sbjct: 84  SSESVGVGDLSSQQ--FTHLISIARQSLSTVQASEDLRDDLRTSSHTTPSGSTRWRLFSE 141

Query: 259 SDSDQED 279
           S+SD  D
Sbjct: 142 SESDDFD 148


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 426 KNHDRVTVVCXPADYDAVVKEIKENKHH 509
           K HDRVTV   P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 426 KNHDRVTVVCXPADYDAVVKEIKENKHH 509
           K HDRVTV   P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At5g41180.1 68418.m05005 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 664

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/55 (41%), Positives = 27/55 (49%)
 Frame = -1

Query: 620 LPGRSIACGSSPIWRGHSPKYE*TXSGLISALCLKTSVMFVLFDFFDYSIVVGRV 456
           L GR+   GS PI    S KY    S  IS LC   S +F + D F Y+   GRV
Sbjct: 176 LIGRNRLRGSIPIAAKTSKKYASNPSANISGLC--KSSLFKVAD-FSYNFFEGRV 227


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 155  LTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAHYQTLTRKT*NVRST 298
            L+ Q++ ++ R+P+M     K +H      + AH Q +TR   NV  T
Sbjct: 1180 LSAQELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELT 1227


>At5g15110.1 68418.m01770 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 472

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 109 VDRQWRYRHGASERRPDSSRCVG--HHESTGDARG 207
           +D+ WR R   ++RR   +RCV    H +TG  RG
Sbjct: 124 IDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRG 158


>At2g04220.1 68415.m00407 hypothetical protein
          Length = 307

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +1

Query: 49  RFGQNGSTLVSKESVGM-WPAVDRQWRYR-----HGASERRPDSSRCVGHHESTGDARGS 210
           +F  N + LV K+ V + W   D  W +      HG    +P ++       S     G 
Sbjct: 216 KFRGNQTVLVDKQPVQVFWDVYD--WLFSMPGTGHGLFIFKPGTTEDSDMEGSGHGGGGG 273

Query: 211 GENFTSSGTRWYLSSLSD 264
           GE+ TS+G+R+Y +  S+
Sbjct: 274 GESDTSTGSRYYSTKSSN 291


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +1

Query: 142 SERRPDSSRCVGHHESTGDARGSGENFTSSGTRWYLSSLSDSDQEDMKRQKYEMISVVVC 321
           S +RPD+   + H       R    +   SGT  Y+     S ++D +  + E++  V  
Sbjct: 259 SRQRPDAKTLLSHPWIRNSRRALRSSLRHSGTIRYMKETDSSSEKDAEGSQ-EVVESVSA 317

Query: 322 NLYPFVQTVSKPDVTV 369
                 +T SK  + V
Sbjct: 318 EKVEVTKTNSKSKLPV 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,878
Number of Sequences: 28952
Number of extensions: 247740
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)