Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0926
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   1.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.4  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 147 QFRTSESERIDRASREPLDRGEREKTNSARSFLLYTAFPI 28
           ++  +ESE  +R  +  L++ + EKTN+ + FL +   PI
Sbjct: 171 KYGLTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPI 210


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 161 WP*RICRELNFTINA*RSFTSKFFSYSPFCTSIVFNEVDDLMSSYIFITNNTYIELYYAV 340
           W  R C ++N T +   +F   FFS+      I    VDD   S +++   T     Y +
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFGTHGDGIKQIAVDD-SRSLLYVLRETSSVSCYEL 274

Query: 341 ISVQFRMCILFACSNI 388
                  C+ ++ S++
Sbjct: 275 TKNGVNRCVFYSFSSM 290


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 162  QREKIQFRTSESERIDRASREPLDRGEREKTNSAR 58
            +RE  + R  + +R DR SR+  DR     + SAR
Sbjct: 1586 ERENSRRRARQDDRRDRDSRQQRDRPRDRTSRSAR 1620


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 221 SKFFS-YSPFCTSIVFNEVDDLMSSYIFITNNTY 319
           S F++ Y PF    VF  +DDL    +    N Y
Sbjct: 155 SSFYTGYEPFDAERVFTNIDDLNPGKLISLQNLY 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,969
Number of Sequences: 5004
Number of extensions: 45857
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)