Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0926
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    30   1.6  
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    30   1.6  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    29   3.7  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    29   3.7  
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    28   6.5  
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145...    27   8.6  

>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 35  NAVYKRNDLAEFVFSLSPRSSGSRDALSILSLSLVLN 145
           N V K +D  EFV S  P + GSR ALS L   + L+
Sbjct: 251 NTVRKLDDGKEFVVSGQPAAGGSRGALSDLKTGVQLS 287


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 127 TLARPKLYFF--SLAVTNLSRVKFYYQ 201
           T+ RP  +FF  ++A+ N+S V FYYQ
Sbjct: 301 TILRPMAWFFFSNVAIPNISTVMFYYQ 327


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
 Frame = +2

Query: 227 FFSYSPFCTSIVFNEVDDLMSSYIFITNNTYIELYY----------AVISVQFRMCILFA 376
           F  Y  F  + ++N +   +++Y+++T       YY          A +  +    + F 
Sbjct: 184 FLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFC 243

Query: 377 CSNIDFGYIIFDCCSXRTAGKQLVYPKL 460
           C  +D  Y+++  C   T    +VY  L
Sbjct: 244 CIVLDNDYMLYYICPMHTLFTLMVYGSL 271


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
 Frame = +2

Query: 227 FFSYSPFCTSIVFNEVDDLMSSYIFITNNTYIELYY----------AVISVQFRMCILFA 376
           F  Y  F  + ++N +   +++Y+++T       YY          A +  +    + F 
Sbjct: 183 FLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVAFC 242

Query: 377 CSNIDFGYIIFDCCSXRTAGKQLVYPKL 460
           C  +D  Y+++  C   T    +VY  L
Sbjct: 243 CIVLDNDYMLYYICPMHTLFTLMVYGSL 270


>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 483 PKSSSRYESFGYTSCLPAVRSL--QQSNIIYPKS 388
           P SS+ Y+S  Y+SC P ++     + N+ YP S
Sbjct: 592 PSSSNLYDSASYSSCEPVMKMSFNYRHNLPYPSS 625


>08_02_0406 +
           16813099-16813166,16813914-16814480,16814549-16814595,
           16814787-16815484
          Length = 459

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   ILKSNLSCVIGNAVYKRNDLAEFVFS 79
           +L    SC +G ++ K +DL EFV +
Sbjct: 35  VLSEGWSCYLGKSLVKESDLTEFVLT 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,941
Number of Sequences: 37544
Number of extensions: 241358
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)