Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0926
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    28   4.4  
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    28   5.8  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    28   5.8  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    28   5.8  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    28   5.8  

>Z46787-16|CAO78703.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 191 NLTRDRFVTAREKKYNLGRARVRE*TERLANHSTVERGRRQTQLGRFSYTQHSLLH 24
           +LTR R +TA  K  +     V+   E L NH T    R+ + L + +   HS  H
Sbjct: 14  DLTRHRKLTADAKAVSPSSCSVKFMPEVLDNHGTTTSARKHSSLSQPALRCHSKQH 69


>Z35596-2|CAO78713.1|  821|Caenorhabditis elegans Hypothetical
           protein C30D11.1b protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 191 NLTRDRFVTAREKKYNLGRARVRE*TERLANHSTVERGRRQTQLGRFSYTQHSLLH 24
           +LTR R +TA  K  +     V+   E L NH T    R+ + L + +   HS  H
Sbjct: 14  DLTRHRKLTADAKAVSPSSCSVKFMPEVLDNHGTTTSARKHSSLSQPALRCHSKQH 69


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 530 NKQNQTNPQLHSSRSRQKVPLDTRVLDILAVYPRFXRYN 414
           NK+  TN +   S  R K   +  VLDIL V  +   YN
Sbjct: 195 NKRKNTNSREEPSSKRSKNETEIAVLDILQVASQSENYN 233


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162 QREKIQFRTSESERIDRASREPLDRGEREK 73
           +RE+ +    E ERI+R  RE ++R  RE+
Sbjct: 416 ERERREHERIEIERIERIKRERIERERRER 445


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162 QREKIQFRTSESERIDRASREPLDRGEREK 73
           +RE+ +    E ERI+R  RE ++R  RE+
Sbjct: 416 ERERREHERIEIERIERIKRERIERERRER 445


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162 QREKIQFRTSESERIDRASREPLDRGEREK 73
           +RE+ +    E ERI+R  RE ++R  RE+
Sbjct: 416 ERERREHERIEIERIERIKRERIERERRER 445


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162 QREKIQFRTSESERIDRASREPLDRGEREK 73
           +RE+ +    E ERI+R  RE ++R  RE+
Sbjct: 416 ERERREHERIEIERIERIKRERIERERRER 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,478,218
Number of Sequences: 27780
Number of extensions: 244514
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)