Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0926
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    31   0.58 
At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf...    29   3.1  
At5g54860.1 68418.m06834 integral membrane transporter family pr...    27   9.5  
At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ...    27   9.5  

>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 177 QIRYGQREKIQFRTSESERIDRASRE-PLD--RGEREKTNSARS 55
           ++R G R+K   R   S+  DR+ R+ P D  R EREK +S+RS
Sbjct: 92  KVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRS 135


>At1g71220.1 68414.m08219 UDP-glucose:glycoprotein
           glucosyltransferase, putative similar to
           UDP-glucose:glycoprotein glucosyltransferase precursor
           GB:Q09332 [SP|Q09332] from Drosophila melanogaster,
           [gi:7670746] and [gi:11346464] from Homo sapiens
          Length = 1673

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -1

Query: 575 VNNPPFXHI*PEETLNKQNQTNPQLHSSRSRQKVPLDTRVLDILAVYPRFXRYNNQIL 402
           +N   F  +  E  LN  N+  P++       ++   T+VLD L       RYN QI+
Sbjct: 686 MNGLVFDSVEEETLLNAMNEELPKIQEQVYYGQIESHTKVLDKLLSESGLSRYNPQII 743


>At5g54860.1 68418.m06834 integral membrane transporter family
           protein contains 10 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 491

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 130 LARPKLYFF--SLAVTNLSRVKFYYQ 201
           + RP  +FF   + V NLS V FYYQ
Sbjct: 290 ILRPMAWFFIAHITVPNLSTVMFYYQ 315


>At3g06550.1 68416.m00761 O-acetyltransferase-related similar to
           O-acetyltransferase (GI:17063556) [Cryptococcus
           neoformans var. neoformans]; contains 7 transmembrane
           domains
          Length = 419

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
 Frame = +2

Query: 227 FFSYSPFCTSIVFNEVDDLMSSYIFITNNTYIELYY----------AVISVQFRMCILFA 376
           F  Y  F  +  +N +   ++ Y+++T       YY          A +  +    ++F+
Sbjct: 189 FLMYHYFAAAEYYNAIRVFIACYVWMTGFGNFSYYYIRKDFSLARFAQMMWRLNFLVIFS 248

Query: 377 CSNIDFGYIIFDCCSXRTAGKQLVYPKLSYLEE 475
           C  ++  Y+++  C   T    +VY  L  + +
Sbjct: 249 CIVLNNSYMLYYICPMHTLFTLMVYGALGIMSK 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,256
Number of Sequences: 28952
Number of extensions: 215600
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)