Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0925
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   107   1e-24
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    28   1.3  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   3.0  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   4.0  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   5.3  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   9.2  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   9.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  107 bits (257), Expect = 1e-24
 Identities = 53/80 (66%), Positives = 64/80 (80%)
 Frame = +2

Query: 17  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITXAPEMLGGRVK 196
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 197 TLHPAVHAGILARLSDSDQE 256
           TLHPAVH GILAR   SD++
Sbjct: 63  TLHPAVHGGILARDIPSDEK 82



 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 37/78 (47%), Positives = 45/78 (57%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTSRD*P*RRSLILSDYDLAISDYFRKQ 584
           KNH RVT++ DPADY     +   +K  Q    T      +     + YD AI+DYFRKQ
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQDDRNTYAL---KAFASTASYDAAITDYFRKQ 189

Query: 585 YSPGQAQLTLRYGMNPHQ 638
           Y+ G  QLTLRYG NPHQ
Sbjct: 190 YAAGVDQLTLRYGANPHQ 207



 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +1

Query: 256 DMKRQKYEMXSVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 399
           D+  Q  E   +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 83  DLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 401 SARRRVTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 291
           +++  V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 150 NSKLSVRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 309 VQVTDHHAXHLVLLTFHVSW 250
           VQVT HH  H+++  F + W
Sbjct: 173 VQVTAHHLWHMIVGRFVIGW 192


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 133 PHSSRCVGHHEXTGDARRSGENFTSSGTCWD 225
           PHS    GH + T  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 443 GRVTDDGDPVVVLGSARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 300
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 490 RRLWAQAEISPEGVHSYFRTMTSPYRTTSASNTRPGKPN*P*DTV*TH 633
           R LW     SP+ + S   T  +P    S+S T  G  +   D + TH
Sbjct: 544 RLLWKNEHGSPKDIRSAASTPANPVYNRSSSQTSKGYNSSDYDLLRTH 591


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = -1

Query: 375 DVDV-LDRVRHGHVRLRYRLDERVQVTDHHAXHLVLLTFHV----SWSESDNRAK--IPA 217
           DV+  +DR      RL+    +R      H  HL+ LT+H+    +W + DNR    +  
Sbjct: 58  DVEATVDRTVEKRSRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCD-DNRLNYLVKY 116

Query: 216 CTAGCKVFTRPPSISGALVMSDT 148
              G +V   P S    ++ + T
Sbjct: 117 IPPGIRVSLHPSSQKSQMIRNKT 139


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 479 VLFDFFDYSIVVGRVTDDGDPVVVLGSARRRVTPPMSMF 363
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -1

Query: 108 VPPLAINCRPHS--DRLFANESRPVLSETLRRASFPFA 1
           +P     C  HS   R F+NES   +     R S PF+
Sbjct: 781 IPAQTTGCSVHSLQQRTFSNESPRAVDSGFSRTSTPFS 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,353
Number of Sequences: 5004
Number of extensions: 44656
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)