Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0925
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 87 8e-18
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 31 0.77
10_08_0415 - 17761594-17762382 30 1.3
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 30 1.3
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 29 4.1
08_01_0621 - 5426210-5427787 28 7.2
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 7.2
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 28 7.2
03_01_0112 + 902459-902770,903275-903280 28 7.2
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 9.5
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 27 9.5
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 9.5
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 87.4 bits (207), Expect = 8e-18
Identities = 44/78 (56%), Positives = 53/78 (67%)
Frame = +2
Query: 2 ANGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITXAPEML 181
A K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML
Sbjct: 43 AGVKQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEML 102
Query: 182 GGRVKTLHPAVHAGILAR 235
GRVKTLHP+VH GILAR
Sbjct: 103 DGRVKTLHPSVHGGILAR 120
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 289 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 399
VVV NLYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 26.6 bits (56), Expect(2) = 0.60
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 561 ISDYFRKQYS-PGQAQLTLRYGMNPHQ 638
+ D F ++ P + TLRYG NPHQ
Sbjct: 248 VGDVFPPNFTVPLSLKSTLRYGENPHQ 274
Score = 23.4 bits (48), Expect(2) = 0.60
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHHQ 491
KNH V V+ D DY A+++ ++ + Q
Sbjct: 179 KNHKDVLVMVDHEDYPALLEYLQGKQDDQ 207
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 31.1 bits (67), Expect = 0.77
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +1
Query: 487 IRRLWAQAEISPEGVHSY 540
+++LWA AE++P+G+HS+
Sbjct: 833 LQQLWATAEVNPQGIHSH 850
>10_08_0415 - 17761594-17762382
Length = 262
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 100 WRYRHGASERRPHSSRCVGHHEXTGDARRSGENFTSSGTCWDLSSIIR 243
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 369 DVLDRVRHGHVRLRYRLDE-RVQVTDHHAXHLV 274
DVL +R GHV L Y L E DHH LV
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHHMDDLV 719
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Frame = +1
Query: 67 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHEXTGDARRSGENFTSSGTCWDLS 231
P G WP + Y +S PHS ++ V H G A G S LS
Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122
Query: 232 SIIRL*PGDMKRQ 270
S P +RQ
Sbjct: 123 SASSNPPPTPRRQ 135
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 458 YSIVVGRVTDDGDPVVVLGSARRRVTPP 375
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 117 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 10
AV PP+A CRPH RL + V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 101 GGTATALRNAGLTVQDVSDITXAPEMLGGRVKT 199
GGTAT LR GL V +S + GGR +T
Sbjct: 370 GGTATELRRRGLCVAALSPAVVSLAAEGGRRRT 402
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 187 TSEHLRCXRDVRHILNCEAGVPK 119
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 131 RRSEAPWRYRHWQSTAGHIPTGS 63
RR PW++ HWQ+ G + + S
Sbjct: 20 RRPVHPWQWHHWQNLLGLLSSSS 42
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 419 PVVVLGSARRRVTPPMSMFSTASATVTSGLDTVWTNGYRLQTTTLIISY 273
P+++ GS V S T+ GL+ VW GY + ++I Y
Sbjct: 237 PIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRMVIGY 285
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/74 (29%), Positives = 27/74 (36%)
Frame = +1
Query: 19 SSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHEXTGDARRSGEN 198
S R DG + V PA+ RH R SSR GH + GD SG
Sbjct: 707 SPSRDSHDGEKTATS--VHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRK 763
Query: 199 FTSSGTCWDLSSII 240
+G W +I
Sbjct: 764 GAPAGKGWQEIGVI 777
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,085,290
Number of Sequences: 37544
Number of extensions: 338252
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -