Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0925
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   113   1e-25
U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...    35   0.043
U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   6.5  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF025450-7|AAN63434.2|  170|Caenorhabditis elegans Hypothetical ...    28   6.5  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    27   8.6  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  113 bits (271), Expect = 1e-25
 Identities = 56/85 (65%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   NGK-LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITXAPEML 181
           +GK LA++SVSDKTGL+ LA  L   GL LIASGGTA A+R+ G+ V DV+D+T  PEML
Sbjct: 3   DGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEML 62

Query: 182 GGRVKTLHPAVHAGILARLSDSDQE 256
           GGRVKTLHPAVH GILAR ++SD++
Sbjct: 63  GGRVKTLHPAVHGGILARDTESDRK 87



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/48 (62%), Positives = 36/48 (75%)
 Frame = +1

Query: 256 DMKRQKYEMXSVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 399
           D+++      SVVVCNLYPF +TV   D +V +AVENIDIGGVTLLRA
Sbjct: 88  DLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135



 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 8/86 (9%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTSRD*P*RRSLI-------LSDYDLAI 563
           KNH+RV+V+CDPADYD ++ E+K         GT+R+   RR L+        + YD +I
Sbjct: 138 KNHERVSVICDPADYDHIISELKSG-------GTTRE---RRQLLALKAFEHTTSYDESI 187

Query: 564 SDYFRKQYS-PGQAQLTLRYGMNPHQ 638
           S + R++++  G+  L LRYG NPHQ
Sbjct: 188 SGFMRRRFAGNGERALPLRYGTNPHQ 213


>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 543 SDYDLAISDYFRKQYSP-GQAQLTLRYGMNPHQ 638
           + YD +IS + R++++  G+  L LRYG NPHQ
Sbjct: 51  TSYDESISGFMRRRFAGNGERALPLRYGTNPHQ 83


>U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical
           protein ZC53.6 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 183 PSISGALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 4
           PS S A   S     +RP  +++ A  P A     H+D+LF         E LRR +FPF
Sbjct: 6   PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 385 TLLRAEPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRLWAQAEISPEGVHSYFRTMTSPY 564
           T+  +   +TT SP++    T    ++     +  R  + Q  I  +  H +  T T+P 
Sbjct: 145 TMTESSSTSTTASPTTTRIRTWTYTTRYPSVHDPNRHRYGQDRIHHQHHHHHHHTTTTPS 204

Query: 565 RTTSASNTRPGKP 603
            TTS + T    P
Sbjct: 205 TTTSTTTTTTVAP 217


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 385 TLLRAEPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRLWAQAEISPEGVHSYFRTMTSPY 564
           T+  +   +TT SP++    T    ++     +  R  + Q  I  +  H +  T T+P 
Sbjct: 145 TMTESSSTSTTASPTTTRIRTWTYTTRYPSVHDPNRHRYGQDRIHHQHHHHHHHTTTTPS 204

Query: 565 RTTSASNTRPGKP 603
            TTS + T    P
Sbjct: 205 TTTSTTTTTTVAP 217


>AF025450-7|AAN63434.2|  170|Caenorhabditis elegans Hypothetical
           protein C41H7.2 protein.
          Length = 170

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 200 KFSPDLRASPVXS*CPTHLEL*GRRSEAPWRYRHWQSTAGH 78
           KF    R  P  S C T  +  G  +EAP  +R  Q+TA +
Sbjct: 128 KFPATPRILPTRSSCSTACQSSGEENEAPKNHRKAQTTAAY 168


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 382 VTLLRAEPRTTTGSPSSVTRPTTML*SKK 468
           VT   AE  TTT S +S  +PTT L   K
Sbjct: 285 VTTTEAETSTTTSSETSTEKPTTPLIDNK 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,668
Number of Sequences: 27780
Number of extensions: 265518
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)