Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0925
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.27 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 481 NIIRRLWAQAEISPEGVHSYFRTMTSP 561
           +++ R+W        G HSY  T+TSP
Sbjct: 80  SMLARIWKPDTYFYNGKHSYLHTITSP 106


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  LLSLAKSLSECGLQLIASGGTATALRNA 130
           LLS  +S+SEC L   +S  +  + RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 484 IIRRLWAQAEISPEGVHSYFRTMTSP 561
           ++ R+W        G HSY  T+T P
Sbjct: 113 MLERIWRPDTYFYNGKHSYVHTITVP 138


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 167 APEMLGGRVKTLHPAV 214
           AP MLGGR  T +  V
Sbjct: 340 APHMLGGRTDTTYRVV 355


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 264 FHVSWSESDNRAKIPACTAGCKVFTRPPSIS 172
           + V+W+     A++  CT G     +P  IS
Sbjct: 518 YSVNWTIGQLEAEVINCTTGKDELGKPSRIS 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,932
Number of Sequences: 438
Number of extensions: 2875
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)