Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0925
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    89   3e-18
At1g64410.1 68414.m07301 hypothetical protein                          31   0.85 
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    31   0.85 
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    27   7.9  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    27   7.9  
At1g23170.1 68414.m02895 expressed protein Location of ESTs gb|A...    27   7.9  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 42/75 (56%), Positives = 53/75 (70%)
 Frame = +2

Query: 11  KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITXAPEMLGGR 190
           K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T  PEML GR
Sbjct: 72  KQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEMLDGR 131

Query: 191 VKTLHPAVHAGILAR 235
           VKTLHP +H GILAR
Sbjct: 132 VKTLHPNIHGGILAR 146



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +1

Query: 289 VVVCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 399
           VVV NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 166 VVVVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 34.7 bits (76), Expect = 0.052
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTSRD*P*RRSLILSDYDLAISDYFRKQ 584
           KNH  V +V D  DY AV++ +K  +  Q      R    +    ++ YD A+S++  KQ
Sbjct: 206 KNHKDVLIVVDSGDYQAVLEYLKGGQSDQQ---FRRKLAWKAFQHVAAYDSAVSEWLWKQ 262

Query: 585 YS-----------PGQAQLTLRYGMNPHQ 638
                        P   + +LRYG NPHQ
Sbjct: 263 TEGKEKFPPSFTVPLVLKSSLRYGENPHQ 291


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHH 488
           K HDRVTV  +P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKENKHH 488
           K HDRVTV  +P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 390 EGHAADVDVLDRVRHGHVRLRYRLDERVQVTDHHAXHLVLLTFHV 256
           +G+A     +  +R G     +RL E +  TDHHA  L +    +
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 405 KNHDRVTVVCDPADYDAVVKEIKE 476
           K HDRVTV  +P + D   KE  E
Sbjct: 342 KEHDRVTVTIEPNNQDTTKKEKDE 365


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 37  QDGSTLVSKEPVGMWP--AVDCQWRYRHGASERRP 135
           +DGS++ S EP+  +P  A DC + Y+   ++  P
Sbjct: 565 KDGSSICSSEPLCSFPSHAEDCPFSYKPSGNQEGP 599


>At1g23170.1 68414.m02895 expressed protein Location of ESTs
           gb|AA395014, gb|T23026, gb|N65311 and gb|N37226;
           expression supported by MPSS
          Length = 569

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 310 PFVQTVSKPDVTVADAVENIDIGGVTLLRAE 402
           P V+ V KP VT+A+A   ID+  +     E
Sbjct: 137 PKVKKVKKPKVTLAEAAAKIDVSNLAAFLVE 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,602
Number of Sequences: 28952
Number of extensions: 250806
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)