Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0924
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    29   0.041
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   0.38 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.51 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.6  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   8.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 237 FRQRFPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 377
           +R+RF + ++ +A   G +   QAE  LS  +   A L T+N SS L
Sbjct: 239 YRKRFRMEKIYVALVWGVK--DQAEFTLSGQVMKYAALATENFSSLL 283


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 96  KFLETLGSIATKAYDLRSLLFLR 28
           +FLE  G +A  A DLR  LF R
Sbjct: 379 RFLEPFGVMADPAVDLRDPLFFR 401


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -1

Query: 501 SYSGSPVHHSICPVLL----PKCN 442
           S+ G P+HH I P +L    P CN
Sbjct: 91  SHHGPPIHHQIRPPILHDTQPMCN 114


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 501 SYSGSPVHHSICPVLL 454
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 501 SYSGSPVHHSICPVLL 454
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 501 SYSGSPVHHSICPVLL 454
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 316 PNSACGS*REPALKAIVTRVTGNRCLKQLRTSC*VKH--LIGS*HLS 182
           PN +  +  +  +K  +TRV+  + +K LR S  ++H  LIG  ++S
Sbjct: 144 PNQSDNNQLDALVKVEMTRVSLLQLIKSLRQSSSLEHCTLIGEDNIS 190


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 453 EATQDKLNDALEILNNLVSTKSSDHGNS 536
           E+ +DK    ++  NNL  +K++  GN+
Sbjct: 444 ESKKDKKGSQVDHKNNLGDSKNNQDGNN 471


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 453 EATQDKLNDALEILNNLVSTKSSDHGNS 536
           E+ +DK    ++  NNL  +K++  GN+
Sbjct: 336 ESKKDKKGSQVDHKNNLGDSKNNQDGNN 363


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 301 HKPNWDCRMYY 333
           H    DCRMYY
Sbjct: 925 HPDKADCRMYY 935


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  ILPKVSKNLRKWHPKLSSPPLFVML 145
           I+P++   +  W+P   + P+ V +
Sbjct: 521 IMPRIQAEVNIWNPLTDTIPIHVWI 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,634
Number of Sequences: 336
Number of extensions: 2953
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)