Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0924
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    42   7e-05
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    41   2e-04
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    36   0.006
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   2.9  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   3.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   3.8  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   3.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   6.6  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   8.8  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   8.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.8  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   8.8  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    25   8.8  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           +++   AGSRY+P A  G+SH+L   A  TT+  S+  I R+   +G  +S    RE I 
Sbjct: 45  LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102

Query: 444 YTLEATQDKLNDALEILNNLV 506
            T     + L     +L  +V
Sbjct: 103 LTARFLNEYLEYYARLLAEVV 123


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 42/85 (49%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
           V +   AGSR E     G +H L   A   TKN S   ++ +    GA+++A   RE   
Sbjct: 46  VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105

Query: 444 YTLEATQDKLNDALEILNNLVSTKS 518
           Y   A ++ + +A+ +L ++++  S
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTNSS 130


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 279 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 458
           KAGSRYE +   G+SH +   A   T+      ++ KL  +G     S  RE + Y    
Sbjct: 74  KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133

Query: 459 TQDKLNDALEILNNLV 506
             D +    ++L   V
Sbjct: 134 FNDDVKSMSKLLAETV 149


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 311 FGLWFITRA-SFEGDCDTGNGEPLSKAATNVLLGKTLDWILTSFFTAG 171
           +GLW ++ A SF  D +  +G   +   ++V L    +WI+  FF AG
Sbjct: 117 YGLWRVSAALSFLNDKNIVHG---NLQMSSVYLNSADEWIIGDFFLAG 161


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 62  FVAILPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 169
           FVA L  V + L +WH KL     F  ++    PK+
Sbjct: 70  FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 193 RIQSSVLPNKTFVAALDNGSPLPVSQSPSKLALVMNHKP 309
           R  S    NK+  + L   +PL  SQSP       +HKP
Sbjct: 603 RFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPSHKP 641


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 312 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 467
           L  S  L S +G  T+ N+S+   QR  ++   + S + D   +YY    T D
Sbjct: 79  LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 532 FPWSELLVETKLFRISSASFN 470
           FPWS LL   KL  +  ++FN
Sbjct: 298 FPWSNLLHHIKLGMLDESNFN 318


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 300 PQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-EFIYYTL-EATQDKL 473
           P+AEL   H+L    G  + ++S+F I    +++      S  R E ++    EA+  + 
Sbjct: 19  PRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSER 78

Query: 474 NDALE-ILNNLVST 512
             AL+ ILNN  S+
Sbjct: 79  KLALQGILNNCSSS 92


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 297 EPQAELGLSHVLRS-AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTL 452
           E + +L   H+L +  AGL T++  SF+ + ++SQ+ +    S D  +  Y++
Sbjct: 298 EKRQKLERDHMLMAQCAGLMTRSDKSFIARIQISQLMSEDPESDDFYYRVYSI 350


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 358 LVVSPAADRSTCDNPNSACGS*REPALKAIVTRVTGN 248
           L+ +P  +R T    +S+C + R+P L  +   +T N
Sbjct: 214 LISTPHVNRGTQFKRSSSCRNSRQPLLSGVDKHLTSN 250


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 DREFIYYTLEATQDKLNDALEILNNLVSTKS 518
           +RE  YY L+   +KL++ +  LN  +  +S
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHES 459


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 232 AALDNGSPLPVSQSPSKLALVMN 300
           A +D GSP+ +   P  L  +MN
Sbjct: 121 AVIDTGSPISIPVGPGTLGRIMN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,390
Number of Sequences: 5004
Number of extensions: 50592
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)