Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0924
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 50 1e-06
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 35 0.045
12_02_0312 + 17395716-17398112 32 0.42
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 29 2.2
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 29 3.0
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 5.2
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 5.2
12_02_0346 - 17776871-17781445 27 9.0
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 27 9.0
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 27 9.0
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +3
Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
P V + GS YE A G SH+L A +T N S + R++ IG VSAS R
Sbjct: 89 PAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASR 148
Query: 432 EFIYYTLEATQDKLNDALEIL 494
E + YT +A + + + +E+L
Sbjct: 149 EQMCYTYDAFKAYVPEMVEVL 169
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 35.1 bits (77), Expect = 0.045
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
V + AGSRYE + G++H + T + ++ ++ ++ IG +++A RE
Sbjct: 123 VGVWIDAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQLEEEIENIGGHLNAYTSREQTT 182
Query: 444 YTLEATQDKLNDALEILNNLV 506
Y + + AL IL +++
Sbjct: 183 YYAKVLDKDVPRALNILADIL 203
>12_02_0312 + 17395716-17398112
Length = 798
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +3
Query: 327 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 506
+++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 507 STKS 518
S +S
Sbjct: 292 SGRS 295
>01_05_0343 +
21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSA 419
+++A K GS E + E G++H++ A T ++ I + L IGA A
Sbjct: 80 LSLAVKVGSVVEEEDERGVAHIVEHLAFSATSRYTNHDIVKFLESIGAEFGA 131
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 479 IIQFVLCCFQ-SVIYEFSVTRSTNICSNL 396
+I +VL CFQ SVI F V S++ CS +
Sbjct: 159 VISYVLVCFQSSVILRFMVFFSSDFCSGI 187
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 309 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 488
E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574
Query: 489 I 491
+
Sbjct: 575 L 575
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 106 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 246
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 275 LQSWLSL*TTSRIGIVACTTISCWTNNQEY**FPYSTQTLSDWSI 409
+Q LSL T +GI C + C +++ Y FP S QTL W++
Sbjct: 1212 IQGLLSLQT---LGIYDCPKLLC-SSSSSYSPFPTSLQTLQLWNV 1252
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 281 FEGDCDTGNGEPLSKAATNVLLGKTL--DWILTSFFTAGAA 165
F DCD G LSK + L +TL D ++TSF A
Sbjct: 852 FPTDCDAGKSFILSKFGKSALPSETLSDDEVITSFLIVAMA 892
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 296 ITRASFEGDCDTGNGEPLSKAATNVLLGKTLDWIL 192
+ RA C TGNG +++ A NV L + D +L
Sbjct: 190 LDRALLPDKCGTGNGSEMAEKAENVNLDEQQDSLL 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,977,262
Number of Sequences: 37544
Number of extensions: 320552
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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