Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0924
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         44   8e-05
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       35   0.046
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     33   0.25 
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   7.0  
SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.2  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.2  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/51 (37%), Positives = 33/51 (64%)
 Frame = +3

Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIG 404
           P++RV + F AGSRYE  + LG++H+LR+AA L         + ++++ +G
Sbjct: 49  PISRVGLFFDAGSRYETDSNLGITHMLRNAAYLLLDFKGKHFVGKRMALVG 99


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSF-LIQRKLSQIGAYVSASGDREFI 440
           V +    GSRYE     G++HV+   A  +T    S   I ++L  +G     +  R+ I
Sbjct: 440 VGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSHDDIMQELEPVGGMADCTSFRDAI 499

Query: 441 YYTLEATQDKLNDALEILNNLV 506
            Y   +    L  A+E+L+  V
Sbjct: 500 VYGTSSFTSGLPLAVEVLSEAV 521


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 36/133 (27%), Positives = 56/133 (42%)
 Frame = +3

Query: 36  REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC*DPIKCFT 215
           R D VN +  L   L+  +  E GI   RR LYS C+D+ +R       ER    +    
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER--GLLLLRV 192

Query: 216 *QDVRSCFRQRFPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLS 395
             ++R        +   ++AF  G R   QAE G S + R    L         ++R+++
Sbjct: 193 RDEIRMTIAAYQTLYESSVAF--GMRKALQAEQGKSDMERKITELENDKRE---LERQVN 247

Query: 396 QIGAYVSASGDRE 434
           ++ A   A   RE
Sbjct: 248 ELKAKCDAIEKRE 260


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 561 YFRRGALSLSSHGL---NSWLKLSYSGSPVHHSICPVLLP 451
           YFR  A+  SS  L   N WLKLS    P H  + P ++P
Sbjct: 268 YFRNTAIFRSSCKLPVTNFWLKLSTIKEPCHRPVTPTVIP 307


>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 123 DESFGCHFRKFLETLGSIATKAYDLRSLLFLRKSLGLV 10
           DE F    RKF+E + S   +  D+  L+ + KSLG V
Sbjct: 26  DERFLFQSRKFMEMINSAVDRLNDISLLVMILKSLGEV 63


>SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -3

Query: 343 AADRSTCDNPNSACGS*REPALKAIVTRVT--GNRCL 239
           AADR T D+PN++  S R+ AL+++    T  GN CL
Sbjct: 167 AADRETIDDPNTS-ESRRQEALQSLSCECTSMGNDCL 202


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 33  GREDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGL 158
           G+E  VN K LLR+ +      E G Q     L   CY   L
Sbjct: 239 GKEHIVNLKQLLRWAVNRQMKAEGGFQGRTNKLVDGCYSYWL 280


>SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 521

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 229 VAALDNGSPLPVSQSPSKLALVMNHKPNWDCRMYYDQLLD*QP 357
           V A D+GSP   S     + L +NH P +    Y   +L  QP
Sbjct: 272 VLASDSGSPPQHSTMTIHITLSINHPPKFTLSSYVTHVLASQP 314


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 229 VAALDNGSPLPVSQSPSKLALVMNHKPNWDCRMYYDQLLD*QP 357
           V A D+GSP   S     + L +NH P +    Y   +L  QP
Sbjct: 808 VLASDSGSPPQHSTMTIHITLSINHPPKFTLSSYVTHVLASQP 850


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,905
Number of Sequences: 59808
Number of extensions: 380777
Number of successful extensions: 979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)