Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0924
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph... 48 7e-06
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph... 46 2e-05
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta... 36 0.016
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta... 36 0.016
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 28 4.3
At5g53840.1 68418.m06690 F-box family protein (FBL13) contains F... 28 5.7
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 28 5.7
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho... 28 5.7
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 27 7.5
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina... 27 10.0
At1g69360.1 68414.m07960 expressed protein 27 10.0
>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 499
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +3
Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
P + + GS YE G +H+L A +T N S F + R++ IG SAS R
Sbjct: 93 PAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASR 152
Query: 432 EFIYYTLEATQDKLNDALEIL 494
E + YT++A + + + +E+L
Sbjct: 153 EQMGYTIDALKTYVPEMVEVL 173
>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 503
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +3
Query: 252 PVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR 431
P + + GS YE G +H+L A +T N + F + R++ IG SAS R
Sbjct: 97 PAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASR 156
Query: 432 EFIYYTLEATQDKLNDALEIL 494
E + YT++A + + + +E+L
Sbjct: 157 EQMSYTIDALKTYVPEMVEVL 177
>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 535
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
V + AGSR+E G +H L T + ++ ++ IG +++A RE
Sbjct: 121 VGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTT 180
Query: 444 YTLEATQDKLNDALEILNNLV 506
Y + +N AL++L +++
Sbjct: 181 YYAKVLDSNVNQALDVLADIL 201
>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
subunit, putative similar to mitochondrial processing
peptidase beta subunit, mitochondrial precursor,
Beta-MPP [Human] SWISS-PROT:O75439
Length = 531
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 443
V + AGSR+E G +H L T + ++ ++ IG +++A RE
Sbjct: 121 VGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTT 180
Query: 444 YTLEATQDKLNDALEILNNLV 506
Y + +N AL++L +++
Sbjct: 181 YYAKVLDSNVNQALDVLADIL 201
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 180 YCRRSLGVAPDRNMTNKGGDESFGCHFRKFLETLGSIATKAYD 52
Y ++++ V PD+NM N+ E+F + L S+ K+YD
Sbjct: 430 YRKKAMLVHPDKNMGNERAAEAFKKLQNAYEVLLDSVKQKSYD 472
>At5g53840.1 68418.m06690 F-box family protein (FBL13) contains
F-box domain PF:00646
Length = 444
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 426 DREFIYYTLEATQDKLNDALEILNNLVSTKSSDHGNSMIML 548
D +F+ +T E T DK+ +L L KSS+ +I +
Sbjct: 168 DLDFVNFTNETTLDKIISCSPVLEELTIVKSSEDNVKIIQV 208
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 178 VKKDVRIQSSVLPNKTFVAALDNGSPLPVSQSPSKL 285
VK DV +SVLP + +AAL+ G + +S S S+L
Sbjct: 406 VKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRL 441
>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
homolog-1 (IRE1-1) identical to Ire1 homolog-1
[Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
GI:15277136;
Length = 881
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 312 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDAL 485
+ + +++S + K I + + K S I + D FIY +LE LND +
Sbjct: 484 VAVKRLVQSHHDVAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLI 541
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 148 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPLPVSQSPSKLALVMNHKPN 312
I G + PA K IQ +L N L +G P + PS+L L + KP+
Sbjct: 4007 IMGQRKFIPA-KDACSIQWDILWNDLVTMELSDGKKDPPNSPPSRLILYLKAKPH 4060
>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 956
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 264 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGA 407
+ +A K GS E + + G++H++ A T ++ I + L IGA
Sbjct: 65 LALAVKVGSVLEEEDQRGVAHIVEHLAFSATTRYTNHDIVKFLESIGA 112
>At1g69360.1 68414.m07960 expressed protein
Length = 896
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 9 ARDLNFS*GREDSVNHKPLLRYYLKFLKTYENGIQNSR 122
A LN + +E+ KPL+ YLKF T GI ++R
Sbjct: 736 AMTLNLTQTKEEDYMPKPLIPEYLKFDGTGSMGITSNR 773
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,697
Number of Sequences: 28952
Number of extensions: 265269
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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