Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0923
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   100   2e-22
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   8.7  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  100 bits (239), Expect = 2e-22
 Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
 Frame = +1

Query: 16  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
           V++A +DDNSV+ LS   ME LQLFRGDTV++KGKRRK+TV IVL+D+   D   R    
Sbjct: 48  VDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRV 107

Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLM-IQXXXXXAIYSXXT*SRTSWRLPSVH 372
                   L       P P        +   L         +++              + 
Sbjct: 108 VRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIR 167

Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*M-LSV**HX 549
           +   F+VR  MR VEFK V+  P  F IV  D +IH +GE I R ++      +      
Sbjct: 168 KGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIG 227

Query: 550 RXSQXXGAI*EMVELPLRYP 609
              +    I E+VELPLR+P
Sbjct: 228 GCRRQMAQIRELVELPLRHP 247



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
           +KY +R+ +LP+ D+V GLTG+LF  YLKPYF+EA
Sbjct: 128 IKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEA 162


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 19  EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 132
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +1

Query: 19  EEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 141
           +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C
Sbjct: 511 KELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,443
Number of Sequences: 5004
Number of extensions: 26330
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)