Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0923
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 123 1e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 122 2e-28
08_02_0657 - 19749835-19751942,19753123-19753561 84 7e-17
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 27 8.8
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 123 bits (297), Expect = 1e-28
Identities = 74/199 (37%), Positives = 100/199 (50%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+RK+T+CIVL+DD C + KIR
Sbjct: 35 VDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKV 94
Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
L P G + ++ +
Sbjct: 95 VRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLR 154
Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*MLSV**HXR 552
+ F+VR GMR+VEFK +ETDP+ + IV PD I CDGE I R ++ +
Sbjct: 155 KGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGG 214
Query: 553 XSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 215 VRKQMAQIRELVELPLRHP 233
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
VKY KRVHILPIDD+V G+TGNLF +LKPYF+EA
Sbjct: 115 VKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEA 149
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 122 bits (295), Expect = 2e-28
Identities = 76/199 (38%), Positives = 100/199 (50%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+RK+T+CIVL+D+ C + KIR
Sbjct: 35 VDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMNKV 94
Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
L G + ++ V
Sbjct: 95 VRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVR 154
Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*MLSV**HXR 552
+ F+VR GMR+VEFK +ETDP+ + IV PD I CDGE I R ++ +
Sbjct: 155 KGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGG 214
Query: 553 XSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 215 VRKQMAQIRELVELPLRHP 233
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
VKY KRVHILPIDD+V G+TGNLF +LKPYF+EA
Sbjct: 115 VKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEA 149
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 84.2 bits (199), Expect = 7e-17
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Frame = +1
Query: 13 EVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXX 192
+ E V+ DNS V LS+A ME+L +FRGD V L+G+RR+E VC D++CPD ++R
Sbjct: 37 DAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRREAVCYAQKDESCPDGRLRLSR 96
Query: 193 XXXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSV 369
L P P+ ++ L V
Sbjct: 97 GVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEPYLKPYFMDALRPV 156
Query: 370 HRDXTFMVRXGMRAVEFKXVETDP-SPFXIVXPDNVIHCD-GEXI*RXEKRXH*MLSV** 543
+ F+VR M AVEFK ++T+P + IV D I CD G+ + R ++
Sbjct: 157 KKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEERLDGPGYDD 216
Query: 544 HXRXSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 217 VGGVRKQLAQIRELVELPLRHP 238
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
++ KRV + P DDSV G++G+LF YLKPYFM+A
Sbjct: 118 IRNAKRVQLRPFDDSVEGISGDLFEPYLKPYFMDA 152
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +2
Query: 80 FNSSVVTQSCSRXNAARKPFA----SCSQTIIALMRKF 181
+NSS + SC+ A ++PF SC+ ++ L R+F
Sbjct: 475 YNSSRLLYSCTAREAEQQPFGCLTDSCTDSLTVLKRRF 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,518
Number of Sequences: 37544
Number of extensions: 189128
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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