Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0923
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         97   7e-21
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     30   1.3  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 45/56 (80%), Positives = 52/56 (92%)
 Frame = +1

Query: 16  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIR 183
           VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVCIVLSDD   D+KIR
Sbjct: 23  VEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVCIVLSDDTISDDKIR 78



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +1

Query: 385 FMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEK 513
           F+VR GMRAVEFK +ETDPSP+ IV PD VIHC+GE + R E+
Sbjct: 106 FLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEE 148


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 13  EVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 162
           ++EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 140 DIEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,076
Number of Sequences: 59808
Number of extensions: 217853
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)