Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0923
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   122   2e-28
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    82   3e-16

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  122 bits (295), Expect = 2e-28
 Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
 Frame = +1

Query: 16  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
           V+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE+V I++SD++CP+EK+R    
Sbjct: 34  VDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVRMNRV 93

Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
                   L       P P+ + G       +          ++              +H
Sbjct: 94  VRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLH 153

Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*M-LSV**HX 549
           +   F V+  MR VEFK VET+P+P  IV PD +IH +G+ I R E+      +      
Sbjct: 154 KGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLG 213

Query: 550 RXSQXXGAI*EMVELPLRYP 609
              +    I EMVELPLR+P
Sbjct: 214 GVRKQLAQIKEMVELPLRHP 233



 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +3

Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
           + Y  R+H+LPIDD++ GLTGNLF  +LKPYF+EA
Sbjct: 114 LSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEA 148


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/56 (62%), Positives = 51/56 (91%)
 Frame = +1

Query: 16  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIR 183
           ++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP++KI+
Sbjct: 34  IDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIK 89



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +1

Query: 367 VHRDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*M-LSV** 543
           VH+   F V+  MR VEFK VETDP+P  IV PD VIH +G+ I R E+      +    
Sbjct: 151 VHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDD 210

Query: 544 HXRXSQXXGAI*EMVELPLRYP 609
                +    I EMVELPLR+P
Sbjct: 211 LGGVRKQLAQIKEMVELPLRHP 232



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
           ++Y KRVH+LPIDD++ GLTGNLF  +L+PYF +A
Sbjct: 113 LEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDA 147


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/56 (62%), Positives = 51/56 (91%)
 Frame = +1

Query: 16  VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIR 183
           ++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV IVL+ DNCP++KI+
Sbjct: 34  IDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIK 89



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +1

Query: 367 VHRDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*M-LSV** 543
           VH+   F V+  MR VEFK VETDP+P  IV PD VIH +G+ I R E+      +    
Sbjct: 151 VHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDD 210

Query: 544 HXRXSQXXGAI*EMVELPLRYP 609
                +    I EMVELPLR+P
Sbjct: 211 LGGVRKQLAQIKEMVELPLRHP 232



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +3

Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
           ++Y KRVH+LPIDD++ GLTGNLF  +L+PYF +A
Sbjct: 113 LEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDA 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,179
Number of Sequences: 27780
Number of extensions: 155064
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)