Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0923
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 125 3e-29
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 122 1e-28
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 121 3e-28
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.79
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 29 3.2
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 5.6
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 125 bits (301), Expect = 3e-29
Identities = 74/199 (37%), Positives = 102/199 (51%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIR
Sbjct: 33 VDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCDEPKIRMNKV 92
Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
L P GN L I+ V
Sbjct: 93 VRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVR 152
Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*MLSV**HXR 552
+ F+VR GMR++EFK +ETDP+ + +V PD I C+GE I R ++ +
Sbjct: 153 KGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGG 212
Query: 553 XSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 213 VRKQMAQIRELVELPLRHP 231
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
VKY RVHILP+DD++ G++GN+F YLKPYF+EA
Sbjct: 113 VKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEA 147
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 122 bits (295), Expect = 1e-28
Identities = 72/199 (36%), Positives = 102/199 (51%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIR
Sbjct: 32 VDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKV 91
Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
L P G + ++ V
Sbjct: 92 VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 151
Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*MLSV**HXR 552
+ F+VR GMR+VEFK +ETDP+ + +V PD I C+GE + R ++ +
Sbjct: 152 KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGG 211
Query: 553 XSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 212 VRKQMAQIRELVELPLRHP 230
Score = 64.5 bits (150), Expect = 5e-11
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
VKY KRVHILP+DD+V G+TGNLF YLKPYF+EA
Sbjct: 112 VKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEA 146
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 121 bits (292), Expect = 3e-28
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 1/199 (0%)
Frame = +1
Query: 16 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRXXXX 195
V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+RK+TVCI L+D+ C + KIR
Sbjct: 32 VDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKV 91
Query: 196 XXXXXXXXLSXXXXXAPXPS*NXGNESTYCQLMIQXXXXXA-IYSXXT*SRTSWRLPSVH 372
L P G + ++ V
Sbjct: 92 VRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVR 151
Query: 373 RDXTFMVRXGMRAVEFKXVETDPSPFXIVXPDNVIHCDGEXI*RXEKRXH*MLSV**HXR 552
+ F+VR GMR+VEFK +ETDP+ + +V PD I C+GE + R ++ +
Sbjct: 152 KGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGG 211
Query: 553 XSQXXGAI*EMVELPLRYP 609
+ I E+VELPLR+P
Sbjct: 212 VRKQMAQIRELVELPLRHP 230
Score = 64.5 bits (150), Expect = 5e-11
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +3
Query: 255 VKYXKRVHILPIDDSVXGLTGNLFXXYLKPYFMEA 359
VKY KRVHILP+DD+V G+TGNLF YLKPYF+EA
Sbjct: 112 VKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEA 146
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 96 TTEELKLLHFGL*KCHD*VVIAD 28
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 10 HEVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 114
HE+ E++ +DN + A + K+ ++ L G+TV +K
Sbjct: 670 HEILESLDEDNVIGAGASGKVYKVVLTNGETVAVK 704
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 4 IRHEVEEAVSDDNSVVALSQAKMEQLQL 87
IRHE+EE +N VAL M ++QL
Sbjct: 758 IRHEIEELKKLENLKVALDDMSMAKMQL 785
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,093
Number of Sequences: 28952
Number of extensions: 146409
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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