Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0922
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   2.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.3  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   8.3  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 494 LLSRRHFSIAFLRFQLVKVPSIKKIIVEH 408
           LL  RHF I+FLRF+L + P   K   EH
Sbjct: 459 LLDCRHFWISFLRFEL-EQPLNSKNYTEH 486


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = +2

Query: 44   RAVEDECLALLDAIP 88
            +A+E++C+ LLD++P
Sbjct: 1623 KAIEEKCITLLDSLP 1637


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  DAIPELGDANLGCAQLARQDVSLQL 151
           ++IPE   ANLGC ++   ++ L L
Sbjct: 46  NSIPEDDAANLGCVRVKNDEIQLLL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,627
Number of Sequences: 5004
Number of extensions: 32480
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)