Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0922
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.6  
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        27   8.7  
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 294 CTKRTKSPSNRVQLESRWSHSARSQHMGACRFAARXXHESSTVSR 160
           C KR   PS+RVQ E  + HS    HM  C   ++    +ST+ R
Sbjct: 540 CDKRFSQPSHRVQHE--FKHSGERSHM--CDICSKSFSRASTLVR 580


>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   DSARDDSWVGKRARRAVEDE 61
           + + DDSW G+RARR  E+E
Sbjct: 516 EESYDDSWRGRRARRKAEEE 535


>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 291 TKRTKSPSNRVQLESRWSHSARSQHMGACRFAARXXHESSTVS 163
           T+R+KSP +R + ESR    +RS+     R   R    S ++S
Sbjct: 94  TRRSKSPKHRHRPESRSRSGSRSKSRSRSRSRGRSRSYSISIS 136


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 14   DDSWVGKRARRAVEDECLALLDAIPELGDANLGCAQLARQDVSLQLPPGLLTVL 175
            DDS +   + +   D   A L+ +P  G+A   CA + R+   LQ+  G++ ++
Sbjct: 1063 DDSQITASSSKPSADPSQARLNLLPADGNAGAWCANVNRRYQYLQIDLGVVRLV 1116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,162
Number of Sequences: 59808
Number of extensions: 242355
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)