Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0922
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical
           protein C50E10.9 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/101 (20%), Positives = 40/101 (39%)
 Frame = +3

Query: 282 YVSYRRLVNSLLFKKSTYYVGVFFIL*LVKVAQALPTCAVQLVFNDYFFYRRNFD*LKPQ 461
           Y+S   ++ S+LF  +      F    L  +   L T A   ++   F+Y      +  +
Sbjct: 166 YISIAIIIVSMLFSSAYSVFFAFNFFNLTFIVIVLVTVASTTLYTSVFYYNTRIKKISDK 225

Query: 462 KGNREMSPREERTFSVIGDVLDIRKIYYVILLYCKEVELSD 584
              RE +    R F  + ++  +R   YV+  +   V L +
Sbjct: 226 NSKRE-NYTLARRFQTMENLKSLRMAKYVVSTHAVYVSLCE 265


>Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical
           protein F28C12.1 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 267 YSDS*YVSYRRLVNSLLFKKSTYYVGVF 350
           +S   YVS   L+  LL   STYYVG++
Sbjct: 143 FSHQYYVSNSLLIIQLLLSLSTYYVGLY 170


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 267 YSDS*YVSYRRLVNSLLFKKSTYYVGVFFI 356
           Y+ S Y+SY    NSL F K T  +G F++
Sbjct: 4   YNKSDYISYNFQWNSLDFPKITVLLGPFYL 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,034,481
Number of Sequences: 27780
Number of extensions: 186384
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)