Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0922
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 516 DVLDIRKIYYVILLYCKEVELSDS 587
           D L  +K  + +LLY ++ +LSD+
Sbjct: 31  DFLHKQKKIFDLLLYVRQADLSDA 54


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 516 DVLDIRKIYYVILLYCKEVELSDS 587
           D L  +K  + +LLY ++ +LSD+
Sbjct: 31  DFLHKQKKIFDLLLYVRQADLSDA 54


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 318 TIKN*LNVCTKRTKSP 271
           TIKN   VC+K+  +P
Sbjct: 35  TIKNLRKVCSKKNDTP 50


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 318 TIKN*LNVCTKRTKSP 271
           TIKN   VC+K+  +P
Sbjct: 9   TIKNLRKVCSKKNDTP 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,618
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)