Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0921
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 44 8e-05
SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16) 35 0.063
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 32 0.45
SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13) 31 0.59
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 31 0.78
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 30 1.4
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 30 1.4
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 2.4
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 3.1
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 29 3.1
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 4.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 5.5
SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 28 5.5
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.2
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15) 27 9.6
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +2
Query: 242 CIXTNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVDRNAYVW 409
C + + ++++ G W + L H V + WAPN T+ I +CS D +W
Sbjct: 10 CSGGGIDTLSMFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIW 69
Query: 410 TQG-DDGKWATTLVLLRINRAATCVKWSPMEN 502
++ ++G+ ++ VL + N V WS N
Sbjct: 70 SRNEEEGEGWSSKVLKKFNDVVWHVSWSVTGN 101
>SB_20681| Best HMM Match : WD40 (HMM E-Value=3.1e-16)
Length = 91
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 442
+H + + + + R+ TCS D++ VW G+DG+W T
Sbjct: 10 DHKDLIHDVSYDFHGRRMATCSSDQSVKVWDLGEDGEWRCT 50
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 284 EGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 415
E +W+ T N H V + WA P +++ +CS DR VW +
Sbjct: 43 EDGEWRCTANWKTHSGSVWKVTWAHPEFGQVLASCSFDRTVAVWEE 88
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 254 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+ N + +Y ++ NL H+ +V + W+ + ++I++C +D Y W
Sbjct: 252 HGNVIQLYSS--TTFENVGNLKGHNGKVRQVIWSQDDSKIISCGMDGAVYEW 301
>SB_22042| Best HMM Match : WD40 (HMM E-Value=6.1e-13)
Length = 232
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +2
Query: 245 IXTNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 424
+ TN+N++ +Y E D + H ++ +D + +IVT S D VW D
Sbjct: 152 VVTNSNQLRLYNLETLDCRMVEG---HSKMILCLDVCADGTKIVTGSKDHTVRVWDVSDC 208
Query: 425 GKWATTLVLLRINRAATCVKWS 490
V A + V WS
Sbjct: 209 SNPRCLAVGNGHTHAVSGVAWS 230
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 517 DRQKLVLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSI 395
D Q LHG H + V T SCPF I+ ++P++ +
Sbjct: 291 DIQAASLHGDMSHTQKQGVYTAIRDPSCPFKILYVTPEILV 331
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 323 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 499
H V +DW P TN + +CS+D + VW +G + A VKWSP
Sbjct: 203 HTSGVNRLDWNPVYTNLLASCSMDNSVRVWDTYLNGICVKSHTF--HGGAVKDVKWSPGG 260
Query: 500 NKFLS 514
+ LS
Sbjct: 261 MQLLS 265
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 236 SNCIXTNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 415
++C T + + N WKQ +L H L V I ++ + RI++ S DR+ V+
Sbjct: 219 TSCKATKPEHACVILWDANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDRSWAVFRL 278
Query: 416 GDD 424
D
Sbjct: 279 RQD 281
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 296 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
W+ + L +H V+ + W+P+ + + + SVD +W
Sbjct: 78 WRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW 115
>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +2
Query: 254 NNNEVHIYK----KEGNDWKQTNNL---VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
N N + ++K K+G T V H ++ I A N I++CS D +W
Sbjct: 168 NGNTIRVFKVSKKKDGTGTTITGEFDFPVRHKAEIINIAVASNGKYIMSCSKDTTIIIWD 227
Query: 413 QGDDGKWATTLVLLRINRA 469
G+ TL L+IN +
Sbjct: 228 L--KGEVLATLDTLQINNS 244
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 311 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+L H L VM +D + ++ IVT S D+N +W
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIW 273
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 284 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 424
+ N W H + +DW N N +CS D+ +V G D
Sbjct: 215 DANTWDVKQQFAFHQAPTLDVDW-QNNNSFASCSTDKLIHVCRLGLD 260
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
V H V ++P+ + V+CS DR VW
Sbjct: 591 VGHTQEVFSCSFSPDDTKAVSCSADRTVKVW 621
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 517 DRQKLVLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 338
D + L+ G P + + CP+ S SP V+ T RTR+ T+ +
Sbjct: 378 DSRYLLFPGLPECHHSPATTNMRRAIMCPYAP-STSPRVTSTTFRTRHRTLSARFFSDVP 436
Query: 337 HSKVVFHKVVCL 302
S V H++ CL
Sbjct: 437 ESHVYVHRISCL 448
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 421
V+ ++ +M I W+ +T+RI+T + +W+ G+
Sbjct: 545 VKGNVAIMSIQWSKDTSRILTLNSQGTVELWSVGN 579
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 254 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 373
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1609 SNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNT--NRIVTCSVDRNAYVWTQGDDG 427
EHD V + W+ N + +CS DR +W + G
Sbjct: 3103 EHDGPVWQVSWSHPMFGNLLASCSYDRKVIIWKESSSG 3140
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 254 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 373
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1489 SNNEVVLAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1528
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 269 HIYKKEGND---WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
HI E ++ W + L H V + W+P+ ++++ SVD +A +W
Sbjct: 158 HILDDENDNLETWTVSKMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 424 IISLSPDVSITVNRTRNNTV 365
I ++SPDVS+T+NRT + T+
Sbjct: 671 ITAISPDVSVTINRTDSVTL 690
>SB_20916| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 507
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -3
Query: 487 PFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVV 308
P + S+ ++ + ++C F + L+ + +RT + + G PINPH ++ +V
Sbjct: 428 PPYISQSTLLGRNGSNACTFISLILAHSYITSASRT-SIQLSRGPPINPHWLSMMLSAIV 486
Query: 307 C 305
C
Sbjct: 487 C 487
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 245 IXTNNNEVHIYKKEGNDWKQTN--NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+ ++N V I+ + G+ N +L EHD V + +RI++ S DR+ VW
Sbjct: 58 VGSDNGAVDIWSQSGSLLGLENLASLKEHDNVVSSVSVDCEKSRIISASWDRSIKVW 114
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 219 WNKDRSQIAXSPTIMKFTYTKRKEMTGSKQTTLWNTTLE 335
W K +S ++ T + TKR +TG K T N T+E
Sbjct: 92 WRKGQSCVSNPQTRTHRSNTKRGVITGQKSNTRSNLTME 130
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
+ +HD +++ W P V+ S DR A +WT
Sbjct: 1273 VAQHDDKMIQCRWHPFLMAFVSSSADRTARLWT 1305
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
N+L HD V GI + R+V+ S DR +W
Sbjct: 826 NSLDGHDGHVRGIAITSDGRRLVSASQDRTLRIW 859
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINR-AATCVKWSP 493
HD RV W+PN + + S D +W + + T L +R + A T V++ P
Sbjct: 87 HDDRVKSCAWSPNGEYVASSSADGRVTLW----EPRLGTALSKIRAHEDAVTHVEFYP 140
>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
Length = 490
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 251 TNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVW 409
+++N +I+K D + L H V + W P + ++VTCS D +W
Sbjct: 94 SSDNNAYIWKVSDAD-RPPVCLRGHAGEVTSVVWCPQDITKVVTCSDDTTVRIW 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,747,785
Number of Sequences: 59808
Number of extensions: 418741
Number of successful extensions: 1106
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -