Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0921
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 140 7e-34
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 140 7e-34
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 140 7e-34
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 6e-04
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 41 8e-04
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.010
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.030
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 33 0.12
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 33 0.12
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 33 0.12
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.12
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.12
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 33 0.12
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.16
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.16
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 33 0.21
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.28
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 32 0.28
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.64
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 0.64
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.64
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.64
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 31 0.84
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 31 0.84
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.84
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 1.9
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 1.9
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 1.9
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 1.9
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 1.9
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 1.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 2.6
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 2.6
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.6
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 3.4
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 3.4
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 3.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.5
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 4.5
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 7.8
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 7.8
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 7.8
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 7.8
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 7.8
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 27 7.8
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 140 bits (339), Expect = 7e-34
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Frame = +2
Query: 254 NNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 430
NN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +
Sbjct: 30 NNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAE 88
Query: 431 WATTLVLLRINRAATCVKWSPMENKF-LSVRS*IDIICYFEXGNNWWVSKHIKKPIRSTV 607
W TLV+LR+NRAA CV+WSP ENKF + + ICY+E NNWWVSK I+K S+V
Sbjct: 89 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSV 148
Query: 608 TSIDWLP 628
TS+ W P
Sbjct: 149 TSVAWHP 155
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAXSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 140 bits (339), Expect = 7e-34
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Frame = +2
Query: 254 NNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 430
NN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +
Sbjct: 30 NNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAE 88
Query: 431 WATTLVLLRINRAATCVKWSPMENKF-LSVRS*IDIICYFEXGNNWWVSKHIKKPIRSTV 607
W TLV+LR+NRAA CV+WSP ENKF + + ICY+E NNWWVSK I+K S+V
Sbjct: 89 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSV 148
Query: 608 TSIDWLP 628
TS+ W P
Sbjct: 149 TSVAWHP 155
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWA 436
Y++E N W H+ V + W PN + T S D V++ +G D K+A
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYA 184
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAXSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 140 bits (339), Expect = 7e-34
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
Frame = +2
Query: 254 NNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 430
NN EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +
Sbjct: 30 NNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAE 88
Query: 431 WATTLVLLRINRAATCVKWSPMENKF-LSVRS*IDIICYFEXGNNWWVSKHIKKPIRSTV 607
W TLV+LR+NRAA CV+WSP ENKF + + ICY+E NNWWVSK I+K S+V
Sbjct: 89 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSV 148
Query: 608 TSIDWLP 628
TS+ W P
Sbjct: 149 TSVAWHP 155
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAXSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 281 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 448
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 449 LLRINRAATCVKWSP 493
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.9 bits (74), Expect = 0.090
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Frame = +2
Query: 314 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 488 SPME--NKFLSVRS*IDIICYFEXGNNWWVSKHIKKPIRSTVTSIDWLP 628
+P E S +I + + W + I + VTS+ W P
Sbjct: 112 APHELGLSLACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 281 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 31.5 bits (68), Expect = 0.48
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 418
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 419 DDGKWATTLVLLRINRAATCVKWS 490
+G+ VL V WS
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS 268
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 452 LRINRAATCVKWSP 493
+ V+W P
Sbjct: 160 TGHTQDVKMVQWHP 173
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 284 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 460
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 461 NRAATCVKWS 490
N + WS
Sbjct: 209 NNGHSSTVWS 218
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 281 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 448
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 449 LLRINRAATCVKWSP 493
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 36.3 bits (80), Expect = 0.017
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 472
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 473 TCVKWSPME--NKFLSVRS*IDIICYFEXGNNWWVSKHIKKPIRSTVTSIDWLP 628
+ W+P + S +I + + W + I + VTS+ W P
Sbjct: 107 NSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 160
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 418
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 419 DDGKWATTLVLLRINRAATCVKWS 490
+G+ VL V WS
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS 268
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 281 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.010
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 427
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 33.9 bits (74), Expect = 0.090
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 326 DLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
DL+V +DW P NRIV+ S D VW
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVW 30
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 449 LLRINRAATCVKWSPMENKFLSVRS*IDIICYFEXGNNWWVSKHIKK 589
L V W P+ S+ S D C SK ++K
Sbjct: 91 LDAHCHYVQGVAWDPLAKYVASLSS--DRTCRIYANKPQTKSKGVEK 135
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 449 LLRINRAATCVKWSPMENKFLSVRS*IDIICYFEXGNNWWVSKHIKK 589
L V W P+ S+ S D C SK ++K
Sbjct: 150 LDAHCHYVQGVAWDPLAKYVASLSS--DRTCRIYANKPQTKSKGVEK 194
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 33.5 bits (73), Expect = 0.12
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 449 LLRINRAATCVKWSPMENKFLSVRS*IDIICYFEXGNNWWVSKHIKK 589
L V W P+ S+ S D C SK ++K
Sbjct: 150 LDAHCHYVQGVAWDPLAKYVASLSS--DRTCRIYANKPQTKSKGVEK 194
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 445
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 446 VLLRINRAATCVKWSP 493
VL + V W P
Sbjct: 134 VLTGHSEDVKMVLWHP 149
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 448
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 449 LLRINRAATCVKWS 490
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 415
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 IXTNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 421
I +N ++H KEG+ K T +++D+ ++ + PNT T V+ +AY + +
Sbjct: 140 IDASNKKIHCRSKEGSSLKGTTEFDMDYDILILAVGAKPNT--FNTPGVEEHAYFLKEAE 197
Query: 422 D 424
D
Sbjct: 198 D 198
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 493
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 494 MENKFLS 514
+ K L+
Sbjct: 280 DDTKLLT 286
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 293 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 421
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 422 --DGKWATTL 445
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 499
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLD 753
Score = 31.1 bits (67), Expect = 0.64
Identities = 28/134 (20%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = +2
Query: 236 SNCIXTNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT- 412
S+C + + I+ E WK L H L V ++++ + +++ S DR+ V++
Sbjct: 617 SSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSI 676
Query: 413 -QGDDGKWATTLV--LLRINRAATCVKWSPMENKFLSVRS*IDIICYFEXGNNWWVSK-H 580
+ D+G+ + L+ + R W+P ++F + S + + N+ + +
Sbjct: 677 QRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQF-ATSSRDKTVKIWSVENDARIKQIL 735
Query: 581 IKKPIRSTVTSIDW 622
+ P S+VT++ W
Sbjct: 736 VLPPFGSSVTAVAW 749
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 287 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 424
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 479 VKWSPM-ENKFLS 514
+++SP+ EN FLS
Sbjct: 552 IQFSPVDENYFLS 564
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 488 SPMENKFLS 514
P F+S
Sbjct: 318 HPTNKYFVS 326
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 488 SPMENKFLS 514
P F+S
Sbjct: 318 HPTNKYFVS 326
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 479 VKWSPMEN 502
V+++P+++
Sbjct: 402 VQFNPVDD 409
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 479 VKWSPMEN 502
V+++P+++
Sbjct: 402 VQFNPVDD 409
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 302 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 479 VKWSPMENKFLS 514
+ WSP + + L+
Sbjct: 325 ILWSPDDRQVLT 336
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 439
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 493
L H V D++ N I + S+D+ VW + + V+ I+ C+++ P
Sbjct: 212 LTGHSKDVTDFDFSSNNQYIASSSLDKTIRVW---ELSRGVCIRVIYGIS-PQYCIRFHP 267
Query: 494 MENKFLSVRS*IDIICYFEXGNNWWVSKHIKKPI-RSTVTSID 619
+ N FLS + + F N+ + IKK + VTS+D
Sbjct: 268 VNNNFLSAGNANKELTVF----NFSTGRIIKKLLFEDEVTSMD 306
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 488 SPMENKFLS 514
SP ++ L+
Sbjct: 349 SPHQSSLLA 357
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 427
K L EH + I ++P+ R+ T S D+ VW + G
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKG 726
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 272 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 493
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 494 MENKFLS 514
+ L+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 493
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 494 MENKFLS 514
+ L+
Sbjct: 315 FQANLLA 321
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNR-IVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 490
HD + +DW P+ N I+T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 491 P 493
P
Sbjct: 385 P 385
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 TNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 430
T++ + IY + + + H V + W P + + +CS D A +W + K
Sbjct: 423 TSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW----NIK 478
Query: 431 WATTLVLLRIN-RAATCVKWSP 493
+T + LR + + ++WSP
Sbjct: 479 QSTFVHDLREHTKEIYTIRWSP 500
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 344 IDWAPNTNRIVTCSVDRNAYVW 409
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 323 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 409
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 311 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 418
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 418
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 418
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 320 EHDLRVMGIDWA-PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPM 496
EH+ R +D++ + +V+ S D VW + +++ + + CVK++P
Sbjct: 461 EHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEA----SVINIDMKANICCVKYNPG 516
Query: 497 ENKFLSVRS*IDIICYFEXGN 559
+ +++V S I Y++ N
Sbjct: 517 SSNYIAVGSADHHIHYYDLRN 537
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,601
Number of Sequences: 28952
Number of extensions: 291883
Number of successful extensions: 871
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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