Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0920
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 0.74
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 1.7
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 4.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 5.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 6.9
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 25 6.9
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 25 9.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.1
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 25 9.1
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 60 VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 224
V+ +AG+ + S+ N+++ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = +3
Query: 84 TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDEVG 263
TEM + ++ NKEL E + + D ++AV S + S++ +L +D
Sbjct: 1158 TEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVLS---GHLDLDTEA 1214
Query: 264 TPWSTATSCGSATDSTLSESTSPITLD 344
+P + + D +++E +D
Sbjct: 1215 SPVVSTIEKTTKGDVSVTEEQQSANID 1241
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 492 LPCGRTQSVLQDPQH*VQPVLETKFD 569
+PCG + + +H +QP L+ FD
Sbjct: 205 IPCGTVSYIKMEKRHWIQPELQYVFD 230
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 75 AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 194
A + + S + + +LE+ + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 261 GTPWSTATSCGSATDSTLSESTSP 332
GT A S GSAT T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 269 MEYCYKLWVGNGQHIVRKYFPY 334
+EYC +L V G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 201 NQGKGSIIQNVVNNLIIDEVGTPWSTATSCGSATDSTLSESTSPITLDS 347
N+ KG + NL++ E G P ATS G+ +++ + D+
Sbjct: 5 NERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADT 53
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 293 PTACSSTPWCSDFVNDQVVNYILDD 219
P+ + S F NDQ++N IL+D
Sbjct: 90 PSGLDGSQLSSSFQNDQLLNVILED 114
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 353 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 484
AG + I+ Y+ +++ P + P NE YG + +L W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 532 NTKYNQYLKLSSTTDCXTQDRVIFGTNTADTTRE 633
NT+Y Q L S TD +Q R+ N T E
Sbjct: 204 NTRYEQMALLESQTDTYSQQRMSSIQNIESTITE 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,486
Number of Sequences: 5004
Number of extensions: 45028
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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