Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0920
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    32   0.40 
U55364-5|AAQ23124.1|  368|Caenorhabditis elegans Prion-like-(q/n...    31   0.52 
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    29   2.8  
U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical p...    28   4.9  
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    28   4.9  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   8.5  
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = +3

Query: 108 SSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDEVGTPWSTATS 287
           SS + + +EK+ + I      S  RQS E ++Q + S++   + ++    V TP STA+ 
Sbjct: 14  SSDDSQSDEKIDDFICRS---SPQRQSKESDDQ-EDSVVDESMKSVNSPIVNTPSSTASH 69

Query: 288 CGS--ATDSTLSESTSPITLDSSW 353
           C +  AT +  S+S +   L SS+
Sbjct: 70  CTNSFATSTPKSKSNASTRLGSSY 93


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = +3

Query: 108 SSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDEVGTPWSTATS 287
           SS + + +EK+ + I      S  RQS E ++Q + S++   + ++    V TP STA+ 
Sbjct: 14  SSDDSQSDEKIDDFICRS---SPQRQSKESDDQ-EDSVVDESMKSVNSPIVNTPSSTASH 69

Query: 288 CGS--ATDSTLSESTSPITLDSSW 353
           C +  AT +  S+S +   L SS+
Sbjct: 70  CTNSFATSTPKSKSNASTRLGSSY 93


>U55364-5|AAQ23124.1|  368|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
           isoform b protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +3

Query: 30  MKFLVVFASCVLAVSA-GVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEY-EN 203
           M+FL + + CVLAV+A   +  S       ++  +   Y S      + A  Q ++Y +N
Sbjct: 1   MQFLTILSVCVLAVAAQQQSAYSTNQQYQPSQGAQYDQYGSSTLQYNNGATAQPIQYNQN 60

Query: 204 QGKGSIIQNVVNNLIIDEVGTPWSTATSCGSATDS 308
           Q  GS  Q   N +   +    +ST ++  +  +S
Sbjct: 61  QQYGSTAQYNQNQMQNQQNSNQYSTTSNMNNQQNS 95


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 110 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 12
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 110 AHASRGHF---SDAGADGEHARREHHEKFHY-HSCLF 12
           A  S G+F   S+ G  G H   EHH K H+ HS  F
Sbjct: 25  ASRSTGNFEEGSEEGTSGSHKPEEHHHKEHHGHSLYF 61


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = +3

Query: 177 VRQSLEYENQGKGSIIQNVVNNL--IIDEVGTPWSTATSC--GSATDSTLSESTSPIT 338
           +R+      QGK S+  N+ ++L  + +E+G+P S +++C   +AT S  S STS  T
Sbjct: 238 IRKQTALRFQGKASV--NLFSDLTAVTNELGSPSSPSSNCVISTATTSIPSTSTSSTT 293


>U64601-10|AAP40523.1|   91|Caenorhabditis elegans Hypothetical
           protein M03F4.7b protein.
          Length = 91

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 113 TAHASRGHFSDAGADGEHARREHHEKFHYH 24
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 113 TAHASRGHFSDAGADGEHARREHHEKFHYH 24
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 113 TAHASRGHFSDAGADGEHARREHHEKFHYH 24
           TA AS  H SD   DGEH + + H+K + H
Sbjct: 13  TALASH-HSSDPSKDGEHFKGKEHDKKYDH 41


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 264 TPWSTATSCGSATDSTLSESTSPITLDSS 350
           T  ST  S  ++TDST +EST+  T +S+
Sbjct: 194 TATSTTESTSTSTDSTTTESTTESTTEST 222


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = +3

Query: 84   TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDEVG 263
            T  S G +    + L +KL +S    D +     S   ++       Q V    + D VG
Sbjct: 1313 TVYSMGKLEKLGRSLLKKLRSSSSRRD-NVPTSSSSSSDSDEYVHKFQVVPPETLDDRVG 1371

Query: 264  TPW--STATSCGSATDSTLSESTSPITL 341
            +P   S   S G ATD T+  S SP+ +
Sbjct: 1372 SPGAGSDEGSAGYATDDTVMSSLSPLDI 1399


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 449 DGKEKNSDLISWKFITLWENTEC 517
           D   KN D+IS  F+  W+N+EC
Sbjct: 175 DANIKNEDIIS--FLNTWQNSEC 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,714
Number of Sequences: 27780
Number of extensions: 263846
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)