Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0918
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   108   6e-25
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    29   0.75 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.00 
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    27   1.7  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.0  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   7.0  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  108 bits (260), Expect = 6e-25
 Identities = 49/80 (61%), Positives = 62/80 (77%)
 Frame = +3

Query: 15  ATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMIS 194
           A  +R +G+ V DVS IT APE+LGGRVKTLHPAVH GILAR   SD++D+  Q  E I 
Sbjct: 34  AKMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEKDLVEQSIEKID 93

Query: 195 VVVCNLYPFVQTVSKPDVTV 254
           +VVCNLYPF +T++KP+VT+
Sbjct: 94  IVVCNLYPFRETIAKPNVTI 113



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 31/64 (48%), Positives = 38/64 (59%)
 Frame = +1

Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRKQ 489
           KNH RVT++  PADY     +   +K    T   R   ALKAF  T+ YD AI+DYFRKQ
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYDAAITDYFRKQ 189

Query: 490 YSPG 501
           Y+ G
Sbjct: 190 YAAG 193



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = +3

Query: 495 ARASXLTLRYGMNPHQKPAQVFTTRDSLPITTLNGA 602
           A    LTLRYG NPHQ PAQ F  +  LP   L G+
Sbjct: 192 AGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGS 227



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 257 DAVENIDIGGVTLLRA 304
           +AVE IDIGGVTLLRA
Sbjct: 115 EAVEEIDIGGVTLLRA 130


>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 628 ARRTVDKSSAPFSVVIGKLSLVVNTWAGF*CGFIPYLK 515
           A +  D +  PFS + GK+ LVVNT +   CGF P  K
Sbjct: 8   APKDKDGNPFPFSNLKGKVVLVVNTASK--CGFTPQYK 43


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 38  PHSSRCVGHHESTGDARRSGENFTSSGTCWD 130
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 558 IPGPASDVGSYRILRSVXLPGRV 490
           +P P+S VGS R+ RS  +P  V
Sbjct: 259 VPSPSSSVGSLRLYRSPSIPNDV 281


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -3

Query: 613 DKSSAPFSVVIGKLSLVVNTWAGF*C--GF--IPYLKVSXLARASIACGSSPIWRGHSPK 446
           DK    F + +  + L V+ W  +    GF  + YL     AR   A  S P+WRG++  
Sbjct: 327 DKKMLKFIITVRPVHLHVSPWVVYRRYRGFKTLYYLLKKQSARNGRAVPSFPVWRGNT-- 384

Query: 445 YE*TPSGL 422
           YE    GL
Sbjct: 385 YEKFREGL 392


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 384 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 268
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,847
Number of Sequences: 5004
Number of extensions: 42936
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)