Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0918
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    67   1e-11
05_02_0049 - 6083364-6084111,6084140-6084246                           29   2.4  
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888     29   3.1  
03_01_0112 + 902459-902770,903275-903280                               29   4.1  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   7.2  
08_01_0621 - 5426210-5427787                                           28   7.2  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +3

Query: 15  ATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQ-EDMKRQKYEMI 191
           A++L  AG+ V  V  IT  PEML GRVKTLHP+VH GILAR       + +        
Sbjct: 79  ASSLEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGILARRDQEHHLKALNEHGIGTF 138

Query: 192 SVVVCNLYPFVQTVS 236
            VVV NLYPF   V+
Sbjct: 139 DVVVVNLYPFYNKVT 153



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +1

Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRKQ 489
           KNH  V V+    DY A+++ ++  +  Q     R+ LA KAF H + YD A+S++  KQ
Sbjct: 179 KNHKDVLVMVDHEDYPALLEYLQGKQDDQQF---RKMLAWKAFQHVASYDSAVSEWLWKQ 235



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 257 DAVENIDIGGVTLLRA 304
           D +ENIDIGG T++RA
Sbjct: 161 DGIENIDIGGPTMIRA 176



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 TLRYGMNPHQKPAQVFTTRDSLPITTLNG 599
           TLRYG NPHQK A  F    SL +    G
Sbjct: 265 TLRYGENPHQKAA--FYGDKSLSVVNAGG 291


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 449 RTMTSPYRTTSASNTRPGKXTDLKIRYEPTSEAGPGIHDQRQL 577
           R+  S  RT  AS +RP K T L +   PTS   P + D  QL
Sbjct: 76  RSTCSTARTAPASPSRPSKLTALNLSSSPTS---PSLTDSIQL 115


>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
          Length = 725

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 300 RRRVTPPMSMFSTASXRSR---PA*IPSGRTGTGYRPP 196
           ++ V P MS  +    R R   PA +P  RTG G RPP
Sbjct: 642 QKDVRPAMSEVAAELARIRDAAPASVPGARTGAGSRPP 679


>03_01_0112 + 902459-902770,903275-903280
          Length = 105

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  TSEHLRCSRDVRHILNCEAGVPKRRGSCRI 3
           T+  LR  RD RH+  CE+GVPK     ++
Sbjct: 58  TATRLRL-RDGRHLAYCESGVPKEEARFKV 86


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  SERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 127
           SE+ P  S C     S  +  ++G +    GTCW
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 363 YSIVVGRVTDDGDPVVVLGXARRRVTPP 280
           YS+  GR+ DDGD  + +   RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,143
Number of Sequences: 37544
Number of extensions: 318135
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)