Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0918
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   2e-27
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      56   2e-08
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     29   4.2  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6)             28   7.4  
SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   9.8  
SB_6746| Best HMM Match : rve (HMM E-Value=2.4)                        27   9.8  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  119 bits (287), Expect = 2e-27
 Identities = 56/80 (70%), Positives = 66/80 (82%)
 Frame = +3

Query: 15  ATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSDSDQEDMKRQKYEMIS 194
           A A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+S+ D+ DM +Q +E I 
Sbjct: 67  ANAIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIR 126

Query: 195 VVVCNLYPFVQTVSKPDVTV 254
           VVVCNLYPFV TV+K  V V
Sbjct: 127 VVVCNLYPFVNTVAKEGVIV 146



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
 Frame = +1

Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRKQ 489
           KNH+RVTVVC P DY+ V+ E+ EN+   T   TR+ LALKAF+HT+ YD+AISDYFRK+
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASYDMAISDYFRKE 225

Query: 490 YSPGQAH*P*D-TV*THIR-SRPRYSRPETACRSRH*TVRWIYQLCDALNAWQ 642
           YS   +H P    +  H + ++     PE   +  +    +I  LCDA N+WQ
Sbjct: 226 YSENVSHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGAPGFI-NLCDAFNSWQ 277



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 504 SXLTLRYGMNPHQKPAQVFTTRDSLPITTLNGA 602
           S + LRYGMNPHQKPAQ+ T    LP+  LNGA
Sbjct: 231 SHIPLRYGMNPHQKPAQLMTMEPELPVKVLNGA 263



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 257 DAVENIDIGGVTLLRA 304
           +AVE IDIGGVTLLRA
Sbjct: 148 EAVEQIDIGGVTLLRA 163


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +3

Query: 129 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTV 254
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIV 43



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 310 KNHDRVTVVCXPADYD 357
           KNH+RVTVVC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 257 DAVENIDIGGVTLLRA 304
           +AVE IDIGGVTLLRA
Sbjct: 45  EAVEQIDIGGVTLLRA 60


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 318  VVLGXARRRVTPPMSMFST-ASXRSRPA*IPSGRTGTGYRPPRLSSRTSDVSCLPGQS 148
            V +  A R +TP +S  S  AS +  PA   SGR     R  RL S  +  S  PGQS
Sbjct: 1951 VSVSPAIRGLTPTISSSSQFASQQEEPA--TSGRLSASDRSGRLRSHLAPFSFPPGQS 2006


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 269 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 403
           N D+      +  P      PSS TR T    +KK  R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 378 FDFFDYSIVVGRVTDDGDPVVVL 310
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_27562| Best HMM Match : Chromo_shadow (HMM E-Value=4.6)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 225 GRTGTGYRPPRLSSRTSDVSCLPGQSRIIELRSQHVPLDVKFSPDLRASPVL 70
           GR G  YRPPR ++R    +    ++  +  + +++ L     P  R+SP +
Sbjct: 231 GRKGRNYRPPRAATRPPRAAIRTSRAATVGRKGRNLALSRLLLPK-RSSPAI 281


>SB_47132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 587 DTERCAGFINCAT 625
           DT RCAGFI+CA+
Sbjct: 120 DTARCAGFISCAS 132


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 291  VTPPMSMFSTASXRSRPA*IPSGRTGTGYRPPRLSSRTSDVSCLPGQ 151
            VTP   + S A+  +  +  PS +  +    PR+SS+ S V   P Q
Sbjct: 1389 VTPASLIISQATKNATSSPTPSIKVTSATAVPRISSQASPVDVCPSQ 1435


>SB_6746| Best HMM Match : rve (HMM E-Value=2.4)
          Length = 488

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 608 IQRTVQCRDRQAVSGREYLGRLLMWVHTVS*GQXACPGEYCLRK 477
           ++ T +  DR     ++ +   LM VHT       C    CLRK
Sbjct: 131 LEETTKTGDRTCDGDQQEVDEYLMTVHTFDAADSPCVANSCLRK 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,540
Number of Sequences: 59808
Number of extensions: 368725
Number of successful extensions: 979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)