Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0918
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei... 73 2e-13
At5g52560.1 68418.m06527 UDP-N-acetylglucosamine pyrophosphoryla... 30 1.5
At4g36980.1 68417.m05240 expressed protein 29 2.0
At1g64410.1 68414.m07301 hypothetical protein 29 2.0
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 29 2.0
At5g61100.1 68418.m07666 hypothetical protein 29 2.6
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase fami... 27 8.0
At2g45150.2 68415.m05619 phosphatidate cytidylyltransferase fami... 27 8.0
At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase fami... 27 8.0
>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
similar to SP|P12048 Bifunctional purine biosynthesis
protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (EC 2.1.2.3) (AICAR transformylase);
IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
MGS-like domain
Length = 596
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 15 ATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLS-DSDQEDMKRQKYEMI 191
A+ L NAG++V V +T PEML GRVKTLHP +H GILAR + E +
Sbjct: 105 ASTLENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTF 164
Query: 192 SVVVCNLYPFVQTVSKP 242
VVV NLYPF + V+ P
Sbjct: 165 DVVVVNLYPFYEKVTAP 181
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = +1
Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYDLAISDYFRKQ 489
KNH V +V DY AV++ +K + Q R++LA KAF H + YD A+S++ KQ
Sbjct: 206 KNHKDVLIVVDSGDYQAVLEYLKGGQSDQQ---FRRKLAWKAFQHVAAYDSAVSEWLWKQ 262
Query: 490 YSPGQAH*P*DTV*THIRSRPRY 558
+ P TV ++S RY
Sbjct: 263 TEGKEKFPPSFTVPLVLKSSLRY 285
>At5g52560.1 68418.m06527 UDP-N-acetylglucosamine
pyrophosphorylase-related contains weak similarity to
UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
(Swiss-Prot:O74933) [Candida albicans]
Length = 614
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 390 SSDDFGHKAEISPEGVHSYFGL*PRHIGLLPQAILARASXLTLRYGMNPHQK 545
+SDD H + ++SYFG+ P + LL Q +A R ++PH K
Sbjct: 194 TSDDT-HSRTLDLLELNSYFGMKPTQVHLLKQEKVACLDDNDARLALDPHNK 244
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 210 GYRPPRLSSRTSDVSCLPGQSRIIELRSQHVPLDVKFSPDLRASPVLS 67
GY PPR SD+ P RI+E D+ D A P S
Sbjct: 355 GYSPPRSPPSQSDLLSRPSPGRILEALHVDPASDISLEKDKVAKPAKS 402
>At1g64410.1 68414.m07301 hypothetical protein
Length = 1231
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHH 393
K HDRVTV P D D KE E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 310 KNHDRVTVVCXPADYDAVVKEIKENKHH 393
K HDRVTV P D D KE E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235
>At5g61100.1 68418.m07666 hypothetical protein
Length = 227
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 52 MCRTSREHRRCSEVG*KLYIQRYMLGS*LDYPTLTRKT*NVRSTR 186
MCR +REH C+ V + + ++ D+ ++ KT N +S+R
Sbjct: 51 MCRDTREHTYCARVMFQRVPRLWICEECRDFSSVANKTANAQSSR 95
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 239 AGRDRXDAVENIDIGG--VTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRLWAQ 412
A R D V ID+ G + +++ R S R + + S SKR +RR+ A
Sbjct: 323 ARRSPVDLVTVIDVSGGNIEMVKRAMRQVISSLRETDRLSMVSFSSSSKRLTPLRRMTAN 382
Query: 413 GR 418
GR
Sbjct: 383 GR 384
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 239 AGRDRXDAVENIDIGG--VTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRLWAQ 412
A R D V ID+ G + +++ R S R + + S SKR +RR+ A
Sbjct: 351 ARRSPVDLVTVIDVSGGNIEMVKRAMRQVISSLRETDRLSMVSFSSSSKRLTPLRRMTAN 410
Query: 413 GR 418
GR
Sbjct: 411 GR 412
>At2g45150.3 68415.m05621 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 382
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 121 CTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVAR 11
CT C+ FTR P I L +P FRS + R
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGLGR 50
>At2g45150.2 68415.m05619 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 287
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 121 CTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVAR 11
CT C+ FTR P I L +P FRS + R
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGLGR 50
>At2g45150.1 68415.m05620 phosphatidate cytidylyltransferase family
protein contains Pfam profile: PF01148 phosphatidate
cytidylyltransferase
Length = 391
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 121 CTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVAR 11
CT C+ FTR P I L +P FRS + R
Sbjct: 14 CTCPCRSFTRKPLIRPPLSGLRLPGDTKPLFRSGLGR 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,000
Number of Sequences: 28952
Number of extensions: 238217
Number of successful extensions: 607
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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