Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0917
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 270 CSSSCFSYQIVYDICDEL 217
           CS    +Y+I  D+CD L
Sbjct: 116 CSGITSAYKIEIDMCDRL 133


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 82 RKDTGQQQRTSSSERRLLWFTRPR 11
          R  TG ++   ++ +R  W++RPR
Sbjct: 27 RPITGDEKWVVNNIKRKRWWSRPR 50


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 1   GIRHEAW*TKEAGAPKMKSAVVVLCLFAASLY 96
           G  HE   T    A  + + V ++CL++  +Y
Sbjct: 730 GNAHETQITTLCVAISLSATVTLVCLYSPKIY 761


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 1   GIRHEAW*TKEAGAPKMKSAVVVLCLFAASLY 96
           G  HE   T    A  + + V ++CL++  +Y
Sbjct: 820 GNAHETQITTLCVAISLSATVTLVCLYSPKIY 851


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,092
Number of Sequences: 438
Number of extensions: 1578
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)