Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0916
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    29   0.41 
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   2.9  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   6.7  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    25   6.7  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   8.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.9  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   8.9  

>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 271 HKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 399
           H    R + NI N + +++I  +  ++H +   E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 185 TTVTYPTSSDSPYIFSGEACLDLVRRNRD 271
           TT     +SD  ++   EAC D+ RRN D
Sbjct: 194 TTHATLDNSDCTFMVDNEACYDICRRNLD 222


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 CPCFFLPGRGRPLR*IYTE 216
           CP F +PGR  P+  +YT+
Sbjct: 678 CPIFTIPGRSYPVEIMYTK 696


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 117 VL*ALRWYFFSLVLT*RSK 61
           VL  L WYFFSL+L+  +K
Sbjct: 54  VLIVLAWYFFSLLLSMMNK 72


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 80  TKEKKYHLNAYNTPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLVR 259
           TK+ K   + Y  P+     S V  Y  + V+    T+     +D  ++   E+C D+ R
Sbjct: 162 TKKSKLQFSVYPAPQVST--SVVEPY--NSVLTTHATLDL---ADCTFMVDNESCYDICR 214

Query: 260 RNRD 271
           RN D
Sbjct: 215 RNLD 218


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 197 YPTSSDSPYIFSGEACLDLVRRNRDTRPLLDTSSTSPIIGIRKLLQPKSDSSTQDL 364
           Y +S D    +SG       RRNR+TRP +   S+S  +  + L   ++     +L
Sbjct: 34  YGSSDDDDEEYSGRTR----RRNRNTRPRVSAPSSSSTVVPKDLYSHRATLEDDEL 85


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 58  HLRSSRQHQGEEVPSQRL 111
           H+RS RQH+    PS+ L
Sbjct: 451 HIRSQRQHKTHAAPSKEL 468


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = -2

Query: 440 TDDSRIYRFGSGTLKTAF----DLMT---TSLSSLGWKNPISA 333
           T+DSR+Y + S T K+ +    +LM      LS L WK   +A
Sbjct: 41  TEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATA 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,850
Number of Sequences: 5004
Number of extensions: 46251
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)