Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0916
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0137 - 31937541-31939892                                         33   0.14 
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    29   2.2  
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    29   2.2  
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   2.9  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    29   2.9  
06_03_1235 + 28593906-28594412,28594670-28594756,28594890-285950...    28   5.1  

>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 253 GKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHP--RLDKEVVIKSNAVFKVPEPNRYI 426
           G  K G   S R +  + NNR+  A  A I  +    R D+ + +  + +   PEPN Y 
Sbjct: 353 GYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYT 412

Query: 427 LESSVSLCHS 456
           L + +S+C S
Sbjct: 413 LAAVLSVCAS 422


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 98  HLNAYNTPEFGNYASGVVFYLPSRVMALETTVTYPTSS 211
           HL+AYN PE   +  GV+  +P   +    ++  P +S
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVPCYAIESYVSLINPNTS 80


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 98  HLNAYNTPEFGNYASGVVFYLPSRVMALETTVTYPTSS 211
           HL+AYN PE   +  GV+  +P   +    ++  P +S
Sbjct: 43  HLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTS 80


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 422 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 321
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 515 TNWLVKHLTTVLETRSAPREE*HRLTDDSRIYRFGSGTL-KTAFDLMTT 372
           T W + H +TVLE     R+      D    Y   S  L KTAFDLM +
Sbjct: 267 TGWALTHPSTVLEEEKLKRQMKPDFLDMVPWYSGTSADLFKTAFDLMVS 315


>06_03_1235 +
           28593906-28594412,28594670-28594756,28594890-28595027,
           28595752-28595771,28595772-28595967,28596104-28596168,
           28596299-28596404
          Length = 372

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 294 EVSNRGLVSLFLLTRSRQASPLNIYGESLL 205
           EV  +G+VS   + +S +A+ LN+Y +++L
Sbjct: 196 EVKEQGMVSFMHIAKSVKATELNLYEDAIL 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,046
Number of Sequences: 37544
Number of extensions: 297673
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)