Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0916
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45211| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                        29   2.3  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               28   4.0  
SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)                   27   6.9  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)                 27   6.9  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.2  

>SB_45211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -1

Query: 333 CNSFLIPIIGDVDEVSNRGLVSL-FLLTRS---RQASPLNIYGESLLVGYVTVVSRAITL 166
           C + L+P   ++DE SNR L  + F L R+   R+ASP  +Y  + L  Y +V S    L
Sbjct: 13  CYNRLLPYEQELDEESNRFLAEIKFNLGRAVVLREASPGALYWSNRLARYFSVESTQEIL 72

Query: 165 D 163
           D
Sbjct: 73  D 73


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 322 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 417
           EA+ AEI    P++++EVV++S A     EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 423 ISIWFRDLEDCVRLDDYLLIKSWVEESDFGCNSFLIPIIGDVDEVSN 283
           +S W R++ D    D+   ++ WV+++  G  S++   I DVDE+ +
Sbjct: 50  LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 201 QPAVTLRIYSAERPASTW*EETGTQDLC*IP 293
           QPAVT+R++  ERP +      G  DL  IP
Sbjct: 436 QPAVTIRVFEGERPLTKHNNLLGKFDLSGIP 466


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 238  LSAEYIRRVTAGWVRYSGL*SHNPGRKIENDSRSIVSELRCIISVEMVLLLLGVDVKI 65
            L+  YIR    G++R      +     I+N S+++ S+++C      V LL G+ +KI
Sbjct: 1501 LTGSYIREKDQGYIREIFYECNLQKVTIDNFSQNVTSKIKCPQRKTNVALLKGIVMKI 1558


>SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)
          Length = 264

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 191 VTYPTSSDSPYIFSGEACLDLVRRNRDTRPLLDTSST 301
           +TY  S + P ++SG+ C D  R+  D   L+D S++
Sbjct: 21  ITYSYSCECPLVYSGKHCDDPCRQLFDVIFLVDGSAS 57


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 191  VTYPTSSDSPYIFSGEACLDLVRRNRDTRPLLDTSST 301
            +TY  S + P ++SG+ C D  R+  D   L+D S++
Sbjct: 2264 ITYSYSCECPLVYSGKHCDDPCRQLFDVIFLVDGSAS 2300


>SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)
          Length = 431

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 182 ETTVTYPTSSDSPYIFSGEACLDLVRRNRDTRPLLDTSSTSPIIGIRKLLQPKS 343
           ET V  P S     +FS     D    +R T+P   TS T  + G+R++  P S
Sbjct: 216 ETFVVEPPSPSYASLFS--VITDAPSVDRSTKPCDATSGTPTVHGLRRVSVPSS 267


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 173  MALETTVTYPTSSDSPYIFSGEACLDLVRRNRDTRPLLDTSS 298
            +A+ TTVT  T+SD     +G     ++  N D + L+D ++
Sbjct: 3211 VAIGTTVTQMTASDLDSSLNGNVLFSILEGNSDGKFLIDQNT 3252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,885
Number of Sequences: 59808
Number of extensions: 340983
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)