Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0915
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 144 7e-36
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 81 6e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 76 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 4e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 43 2e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.001
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.43
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 0.75
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.3
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.0
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 24 9.3
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.3
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 144 bits (348), Expect = 7e-36
Identities = 63/65 (96%), Positives = 63/65 (96%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 432 APLNP 446
APLNP
Sbjct: 108 APLNP 112
Score = 99.5 bits (237), Expect = 2e-22
Identities = 42/49 (85%), Positives = 48/49 (97%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG++
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 81.4 bits (192), Expect = 6e-17
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +3
Query: 255 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 431
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 432 APL 440
PL
Sbjct: 113 PPL 115
Score = 55.2 bits (127), Expect = 4e-09
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 243
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 75.8 bits (178), Expect = 3e-15
Identities = 29/70 (41%), Positives = 50/70 (71%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 416
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 417 VLLTEAPLNP 446
+LLTE P+NP
Sbjct: 103 ILLTEPPMNP 112
Score = 48.0 bits (109), Expect = 7e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 225
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.5 bits (160), Expect = 4e-13
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 437
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 438 LNP 446
LNP
Sbjct: 133 LNP 135
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 216
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.6 bits (103), Expect = 4e-06
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 413
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 414 PVLLTEAPLNP 446
P+ +TE NP
Sbjct: 117 PICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 228
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 42.7 bits (96), Expect = 2e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 303 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 446
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 37.1 bits (82), Expect = 0.001
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 258 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 432 APLNP 446
NP
Sbjct: 109 PSWNP 113
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.43
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 350 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLPIPTITP*WRGLPTIEGNTARGASSPAK 171
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 170 PALHIP 153
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 0.75
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 288 SVPHLLHKSPSAHTDHHALMAGPSHDRGEH 199
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 248 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 114
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 254 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 162
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 318 PIEHGIVTNWDDMEKIWHHTF 380
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAG 180
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 178 GDDAPRAVFPSIVGRPRHQGVMVGM 252
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 300 ILTLKYPIEHGIVTN 344
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 339 TNWDDMEKIWHHTFYNELRVAPEEHP 416
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 314 FEGQDTSFALCLISYIRVLLP 252
+EG+DT+ +Y+R++LP
Sbjct: 74 YEGEDTTRITRFANYLRIILP 94
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 397 SPPRNTQSCSLRLPSTP 447
SPP++T+ S R PS P
Sbjct: 285 SPPQSTRPSSTRFPSVP 301
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 165 LAHTGAIVYYQRGNFFVAHLELVF 94
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,234
Number of Sequences: 5004
Number of extensions: 42395
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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