Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0914
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   3.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   7.5  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   9.9  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   9.9  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.9  

>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 288 HHFLNTDLEVI*KNKYGFS 344
           HHF NT  +   K +YGFS
Sbjct: 537 HHFANTHSQASIKQRYGFS 555


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 163 Y*NRHSVMMTY*MERKNSFMNNSTVSHYDLL 255
           Y N  S+ M +  ++K  F+N+ + + YDLL
Sbjct: 242 YKNGISISMKFDKDQKKLFINDVSTTKYDLL 272


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 377 LISHLFNSSYNFQLFHYFTESTNWRIVVKYSSPIYESQMIINXI 508
           ++++L +S+ N  L H       +R+VV  S P +E ++ +  +
Sbjct: 271 ILTYLHSSTVNDVLIHAKNVGKKFRVVVVDSRPEFEGRVCLKLL 314


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 214 SFMNNSTVSHYDLLRDKIYL 273
           S+MNN+  S+YD  +DK ++
Sbjct: 2   SYMNNTFQSNYDYSKDKNFM 21


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +1

Query: 64  HATIIR-KICFFFNDHTRLTFSIRQPIINLC----RCFY*NRHSVMMTY*MERKNSFMNN 228
           H  +IR    F++ ++    F  + P   L     + F+   +   + Y +    +F++N
Sbjct: 442 HKNLIRYNESFWYLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHN 501

Query: 229 STVSHYDLLRDKIYL 273
           S ++H++L  + IYL
Sbjct: 502 SGIAHHNLTTECIYL 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,804
Number of Sequences: 5004
Number of extensions: 41884
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)