Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0914
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po...    28   3.6  
At2g45940.1 68415.m05712 hypothetical protein contains Pfam prof...    27   8.4  

>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
           potassium channel protein identical to SKOR [Arabidopsis
           thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
           6 transmembrane (1P/6TM) Shaker K+ channel family,
           PMID:11500563
          Length = 828

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 360 IHRTAMRIHIYFFILPPGQYLKNDGSFKDQINFV 259
           I++  +R+H  FF+  PG+ +   GS  DQ+ FV
Sbjct: 412 INQIVIRLHEEFFL--PGEVIMEQGSVVDQLYFV 443


>At2g45940.1 68415.m05712 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 399

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 376 TV*VFNSSHSHENPYLFFYIT 314
           T+ +F+SS +  NPYL +Y+T
Sbjct: 32  TLRMFSSSSTTTNPYLMYYVT 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,876
Number of Sequences: 28952
Number of extensions: 200564
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)