Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0913
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    29   1.6  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   4.9  
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    27   8.6  
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331...    27   8.6  

>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 232 RNAAVAVTRVRHMRNSCDGMFVRLVHF-QFQNETIKRTNAPVRSVVYVILYVPC 390
           RNA +A + +  +R     + V+L  F   Q   +KR  AP +SVV+  L++ C
Sbjct: 196 RNAFLAASCILFVR----AVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCC 245


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 69  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 167
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 99  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 188
           C W  +  G  N++ F MFI     +C +VF
Sbjct: 228 CPWVGQCIGKRNYRFFFMFISSTTFLCLYVF 258


>08_02_1418 -
           26931896-26932339,26932435-26932668,26932805-26933110,
           26933462-26933644,26934386-26934493
          Length = 424

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 99  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 188
           C W  +  G  N++ F MF+     +C +VF
Sbjct: 190 CPWVGQCIGKRNYRFFFMFVSSTTLLCVYVF 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,796,354
Number of Sequences: 37544
Number of extensions: 175291
Number of successful extensions: 328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)