Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0913
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   4.1  
At1g17360.1 68414.m02116 COP1-interacting protein-related simila...    27   5.4  
At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ...    27   7.2  
At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putativ...    27   7.2  

>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  LRRGGDFCDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 188
           ++R    C W  +  G  N++ F MFI  +  +C +VF
Sbjct: 169 VQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIYVF 206


>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
           to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
           [Arabidopsis thaliana]
          Length = 1032

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 173 ATRKTNEHMKNFKISRT--KKFMRPITKVSSSPQCIYVKLLTGQDI 42
           +TR+  E  ++F  SRT  KK+  PI+ + S  +    KL++GQ I
Sbjct: 609 STRQRAEKFRSFN-SRTSSKKYQHPISSLQSEEENEKDKLVSGQSI 653


>At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein
           similar to Golgi-specific DHHC zinc figer protein [Mus
           musculus] GI:21728103; contains Pfam profile PF01529:
           DHHC zinc finger domain
          Length = 286

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 99  CDWTHKFFGPGNFKIFHMFIGFARCVC 179
           C W +   G  N+K+F +F+ +A   C
Sbjct: 127 CIWINNCVGHTNYKVFFVFVVYAVTAC 153


>At1g55510.1 68414.m06350 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 beta
           subunit, putative strong similarity to branched chain
           alpha-keto acid dehydrogenase E1 beta subunit
           [Arabidopsis thaliana] GI:7021286; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 352

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 304 LTERTCRRMSYAYVSHGLRR 245
           L  R+CR++S+  +SHG RR
Sbjct: 4   LLGRSCRKLSFPSLSHGARR 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,042,401
Number of Sequences: 28952
Number of extensions: 152926
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)