Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0912
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    28   1.7  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   2.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.1  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.7  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 318 YNSFHI*NSCFVENVLRL----FTMNSILFLIIVATCAGLSTFGM*LLCTVITKCVISNM 485
           + SF +  S FV + L +    F +NS +  + V T  GL T    LL T+  K V SN+
Sbjct: 497 WTSFLVAYSTFVSSALAVELLKFCLNSYVNFVSVCTLFGLETPRDALLTTLSNKAVPSNL 556


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 557 MISIGSSNKLISYICRYCEVNSKFHI 480
           ++ + + NK++S+ CRY + N  F I
Sbjct: 105 LLGVDAQNKILSHACRYIKKNYDFDI 130


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 105  LKKLR*NYLKHTRDNTVSVVQ*FFNPETATY---IVTGRFGICII--GTICRY 248
            L+KL   Y K  RDN    V  +FN +T  Y   +  GR  I ++  G  C Y
Sbjct: 1065 LQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIALLLRGFFCYY 1117


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -1

Query: 484 IFEITHLVITVQSNYIPKVDNPAHVATIIKNRILFIVNKRSTFSTKH 344
           I E  + ++T+   +IP   + ++  +++K    FI+ K + F +KH
Sbjct: 369 ITEENYNLLTLLVTHIPITTDSSYFNSLLKEFEQFILQKNAEFCSKH 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,708
Number of Sequences: 5004
Number of extensions: 62914
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)